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CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00010
Bact-VirCG_2015-01t_scaffold_23_prodigal-single.1__X__X__00010
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-72
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 54.0 | 4.86e-01 | 80.6% | 56.8% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.69 | 56.0 | 4.51e-01 | 90.3% | 70.2% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.69 | 50.0 | 5.10e-01 | 77.4% | 84.5% |
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.69 | 57.0 | 5.37e-01 | 96.8% | 75.3% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 53.0 | 4.51e-01 | 88.7% | 65.0% |
| 6k6iA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 54.0 | 3.83e-01 | 100.0% | 70.3% |
| 2qvwC06 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.64 | 56.0 | 4.25e-01 | 100.0% | 83.0% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 41.0 | 4.32e-01 | 80.6% | 73.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 5.10e-01 | 87.1% | 87.9% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 42.0 | 3.74e-01 | 74.2% | 51.1% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.60 | 48.0 | 4.28e-01 | 90.3% | 98.9% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.59 | 50.0 | 3.95e-01 | 100.0% | 62.7% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.58 | 41.0 | 3.44e-01 | 74.2% | 98.1% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.58 | 38.0 | 4.07e-01 | 79.0% | 87.5% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.57 | 34.0 | 3.18e-01 | 100.0% | 47.4% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 42.0 | 3.78e-01 | 80.6% | 97.7% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 39.0 | 4.17e-01 | 72.6% | 92.6% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 48.0 | 3.83e-01 | 100.0% | 82.3% |
| 4gxbA02 | 1.20.80.60 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 43.0 | 4.38e-01 | 100.0% | 93.5% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.52 | 43.0 | 4.26e-01 | 93.5% | 87.9% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 44.0 | 3.40e-01 | 100.0% | 41.3% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3327321 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.80 | 64.0 | 5.60e-01 | 85.5% | 74.4% |
| 5074775 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.73 | 54.0 | 4.32e-01 | 79.0% | 77.1% |
| 5004958 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 48.0 | 5.03e-01 | 77.4% | 80.0% |
| 4932431 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.71 | 52.0 | 4.19e-01 | 91.9% | 41.2% |
| 3587847 | 5076.2.1.4 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › GPDPase_memb | 0.69 | 54.0 | 4.08e-01 | 88.7% | 56.2% |
| 3477670 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.66 | 47.0 | 4.68e-01 | 77.4% | 76.9% |
| 5057374 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.65 | 49.0 | 3.90e-01 | 82.3% | 88.1% |
| 4243068 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.65 | 50.0 | 4.47e-01 | 91.9% | 58.9% |
| 5018166 | 2004.1.1.210 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ERCC3_RAD25_C | 0.63 | 46.0 | 3.25e-01 | 80.6% | 87.0% |
| 5000806 | 251.1.1.1 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS | 0.63 | 54.0 | 4.49e-01 | 98.4% | 55.7% |
| 4946450 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.62 | 42.0 | 3.82e-01 | 71.0% | 52.3% |
| 3404483 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.62 | 42.0 | 3.83e-01 | 100.0% | 51.8% |
| 3873240 | 378.1.1.25 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › MH1+NfI_DNAbd_pre-N | 0.62 | 49.0 | 3.58e-01 | 90.3% | 56.2% |
| 3814617 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.61 | 46.0 | 4.44e-01 | 82.3% | 72.9% |
| 3518577 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.60 | 46.0 | 2.95e-01 | 91.9% | 17.3% |
| 3991717 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 42.0 | 3.49e-01 | 77.4% | 75.2% |
| 4945073 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.59 | 41.0 | 3.72e-01 | 74.2% | 51.1% |
| 5039745 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.57 | 43.0 | 3.00e-01 | 83.9% | 73.8% |
| 3439564 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.55 | 48.0 | 3.46e-01 | 100.0% | 75.1% |
| 3580689 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.55 | 39.0 | 3.71e-01 | 75.8% | 64.0% |
| 4965621 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.54 | 44.0 | 2.74e-01 | 95.2% | 45.2% |