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CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00023

Bact-Vir

CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00023

Identity

Kingdom:
phage

Quality

84.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-210
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.87 75.0 7.89e-01 98.3% 97.5%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.85 76.0 7.86e-01 97.1% 98.8%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.84 74.0 7.57e-01 98.3% 95.8%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.81 58.0 6.67e-01 95.3% 98.4%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 53.0 6.01e-01 96.5% 99.2%
3wuhB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 57.0 5.72e-01 97.7% 83.4%
3n4pC00 3.30.420.320 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › DNA-packaging terminase, C-terminal nuclease domain 0.69 62.0 5.74e-01 97.1% 85.8%
2ivnA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 54.0 5.52e-01 97.1% 86.3%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 51.0 5.66e-01 96.5% 98.6%
3zeuB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 55.0 5.58e-01 97.1% 87.2%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 51.0 5.58e-01 97.1% 99.3%
2qxlB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 49.0 5.49e-01 98.8% 100.0%
1tigA00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.61 31.0 4.10e-01 94.8% 92.0%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 49.0 4.38e-01 89.5% 91.8%
2khoA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 5.00e-01 97.7% 96.9%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 41.0 4.57e-01 88.4% 96.2%
5agaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 3.83e-01 73.3% 83.2%
4hyqA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 50.0 4.46e-01 97.7% 97.0%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 40.0 4.43e-01 87.8% 94.3%
1c2yA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.54 40.0 4.21e-01 98.3% 84.5%
4lnuB01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.54 49.0 4.31e-01 100.0% 93.1%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.53 44.0 4.37e-01 85.5% 90.3%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 47.0 4.54e-01 96.5% 100.0%
4b45A01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.53 48.0 4.51e-01 100.0% 91.7%
5dxfA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 41.0 3.86e-01 89.0% 68.1%
3rjtA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 47.0 4.36e-01 98.8% 99.1%
3l6eA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 4.40e-01 98.3% 91.4%
3vv3A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.51 45.0 3.74e-01 98.8% 86.0%
1z8hA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 46.0 4.40e-01 98.3% 95.0%
6gn6A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 46.0 3.74e-01 97.7% 77.8%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 46.0 4.15e-01 100.0% 91.2%
2ixtA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.51 45.0 3.79e-01 99.4% 91.3%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.50 43.0 3.34e-01 94.2% 91.4%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4202129 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 79.0 8.24e-01 97.7% 98.1%
4218879 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 78.0 8.21e-01 98.3% 99.4%
4296237 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 78.0 8.20e-01 97.1% 99.4%
4373226 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 78.0 7.56e-01 98.3% 83.2%
4631411 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 79.0 8.22e-01 98.8% 99.4%
4610182 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 79.0 7.57e-01 98.3% 82.6%
4252006 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 78.0 7.95e-01 98.3% 93.9%
4069907 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 79.0 8.02e-01 98.3% 93.5%
3966304 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 76.0 8.00e-01 97.7% 98.7%
4414942 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.88 76.0 7.90e-01 97.1% 96.2%
4275354 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.97e-01 97.7% 99.4%
4484979 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.70e-01 98.3% 92.3%
4522962 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.61e-01 98.8% 89.1%
4162179 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 75.0 7.93e-01 97.7% 99.4%
4106513 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 77.0 7.80e-01 98.8% 92.9%
3387304 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.87e-01 98.3% 96.9%
4571749 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.80e-01 98.3% 94.5%
4162427 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.87e-01 98.3% 97.5%
4543638 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 76.0 7.77e-01 98.3% 94.5%
4240117 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 76.0 7.66e-01 98.8% 91.3%
1096260 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 72.0 7.57e-01 98.3% 94.9%
4123278 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 75.0 7.60e-01 98.3% 91.8%
4292358 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 73.0 7.47e-01 96.5% 92.1%
4529580 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 75.0 7.82e-01 97.7% 98.1%
4579381 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.85 75.0 7.76e-01 98.3% 98.1%
4638438 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.85 74.0 7.73e-01 98.3% 98.1%
4669382 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 74.0 7.62e-01 97.1% 97.6%
3911068 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 77.0 7.16e-01 98.3% 90.4%
4995729 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 77.0 6.78e-01 98.8% 84.5%
4979515 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 65.0 6.92e-01 97.7% 94.7%
5040920 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 77.0 7.60e-01 100.0% 97.8%
4278305 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.79 61.0 6.72e-01 97.7% 98.6%
3457302 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.76 61.0 6.16e-01 98.3% 83.5%
4108481 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.76 58.0 6.39e-01 97.7% 97.8%
3596162 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 61.0 5.92e-01 100.0% 82.1%
5058136 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 47.0 5.41e-01 98.8% 97.6%
143295 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 46.0 5.41e-01 99.4% 100.0%
4961847 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.66 62.0 5.72e-01 100.0% 95.8%
2125479 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 58.0 5.55e-01 98.3% 86.7%
3937433 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.61 41.0 4.68e-01 91.9% 92.8%
3601539 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.58 49.0 4.42e-01 88.4% 85.2%
3605420 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.58 49.0 4.26e-01 87.8% 86.4%
3895768 2005.1.1.23 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.58 44.0 3.93e-01 100.0% 57.1%
3623828 2003.1.6.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.55 51.0 4.44e-01 100.0% 95.2%
3970680 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 38.0 4.36e-01 89.5% 97.6%
4956039 2007.1.13.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.54 40.0 4.38e-01 98.3% 93.6%
4929265 2004.1.1.260 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.54 39.0 3.76e-01 74.4% 80.0%
4945830 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.54 43.0 4.46e-01 88.4% 89.4%
3936603 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 38.0 4.29e-01 77.3% 95.4%
4882357 2003.1.6.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.54 49.0 4.42e-01 100.0% 99.2%
3562870 2484.1.1.204 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.53 49.0 3.52e-01 100.0% 69.5%
4116396 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.53 44.0 4.03e-01 87.2% 68.9%
4284801 2003.1.6.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.53 48.0 4.29e-01 100.0% 85.3%
4081900 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 38.0 4.00e-01 86.0% 80.6%
1144534 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.52 47.0 4.36e-01 98.8% 97.7%
4001806 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.52 40.0 4.07e-01 100.0% 80.6%
3511076 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.51 39.0 4.19e-01 100.0% 94.5%
4957334 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.51 36.0 4.11e-01 93.6% 97.6%
4944648 2003.1.6.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.51 46.0 4.27e-01 100.0% 94.1%
3738310 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.51 43.0 3.22e-01 91.3% 91.7%
3583171 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 40.0 4.10e-01 100.0% 86.7%
4114495 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.51 42.0 3.95e-01 88.4% 82.9%
3479417 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.50 38.0 4.13e-01 100.0% 96.4%
3265988 2005.1.1.23 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.50 43.0 3.79e-01 90.1% 71.6%
4017770 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 37.0 3.75e-01 98.3% 76.5%