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CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00181

Bact-Vir

CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00181

Identity

Kingdom:
phage

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-126
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 48.0 4.90e-01 78.0% 73.1%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.67 46.0 3.57e-01 72.0% 34.1%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.57e-01 70.7% 98.8%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.64 48.0 4.52e-01 78.0% 70.1%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 43.0 3.96e-01 70.7% 53.1%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 43.0 4.39e-01 72.0% 83.3%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 46.0 3.87e-01 80.5% 72.9%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.61 49.0 4.43e-01 85.4% 91.8%
4nmyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 46.0 3.47e-01 82.9% 91.9%
2onkC00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.59 43.0 3.12e-01 78.0% 50.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.73e-01 97.6% 92.5%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 40.0 3.44e-01 72.0% 53.6%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.58 46.0 4.26e-01 85.4% 97.1%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.74e-01 93.9% 98.8%
2i71A02 1.10.3740.10 Mainly Alpha › Orthogonal Bundle › SSO1389-like fold › SSO1389-like domains 0.54 38.0 3.26e-01 75.6% 89.2%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.52 42.0 3.94e-01 97.6% 72.0%
3hzjA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.52 37.0 3.09e-01 75.6% 85.9%
4qiqA00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 43.0 2.74e-01 95.1% 89.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996152 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.84 73.0 7.05e-01 95.1% 83.3%
5081313 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.74 64.0 6.18e-01 95.1% 83.3%
3249906 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.74 54.0 5.41e-01 76.8% 83.5%
3269593 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.73 53.0 5.43e-01 76.8% 87.5%
3360891 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.69 49.0 5.07e-01 73.2% 81.3%
4957643 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.69 47.0 3.30e-01 70.7% 43.4%
4167899 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.69 45.0 5.14e-01 80.5% 100.0%
4052741 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.71e-01 72.0% 73.8%
3337098 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 46.0 4.37e-01 70.7% 66.3%
3672635 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.65 52.0 5.35e-01 96.3% 96.0%
3990780 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.78e-01 74.4% 85.7%
3723123 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 45.0 5.09e-01 92.7% 98.3%
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 45.0 4.88e-01 74.4% 100.0%
4164573 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.60 47.0 4.27e-01 85.4% 88.7%
5034431 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.59 51.0 4.38e-01 100.0% 67.1%
5031078 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 48.0 4.51e-01 97.6% 94.0%
3933830 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.42e-01 87.8% 40.0%
2527281 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.54 38.0 3.18e-01 73.2% 50.3%
3919329 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.51 34.0 3.15e-01 70.7% 75.7%