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CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00188
Bact-VirCG_2015-01t_scaffold_23_prodigal-single.1__X__X__00188
Identity
- Kingdom:
- phage
Quality
62.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 183-284
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 33.0 | 3.59e-01 | 86.3% | 64.4% |
| 3rmzA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.59 | 43.0 | 3.76e-01 | 79.4% | 89.7% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 34.0 | 3.97e-01 | 89.2% | 83.3% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.55 | 43.0 | 4.02e-01 | 83.3% | 96.7% |
| 4l00A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 47.0 | 3.97e-01 | 99.0% | 97.8% |
| 8fnyA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 37.0 | 2.99e-01 | 94.1% | 36.4% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 38.0 | 3.42e-01 | 77.5% | 69.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4606869 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.60 | 43.0 | 4.56e-01 | 100.0% | 85.6% |
| 3274511 | 601.19.1.31 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › ICAT | 0.58 | 35.0 | 3.96e-01 | 85.3% | 77.5% |
| 2330628 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.55 | 39.0 | 3.23e-01 | 73.5% | 91.9% |
| 3387216 | 3281.1.2.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh | 0.54 | 47.0 | 3.38e-01 | 100.0% | 44.2% |
| 3441635 | 109.4.1.1848 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10, TPR_19 | 0.54 | 44.0 | 3.17e-01 | 91.2% | 62.5% |
| 3577534 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.53 | 44.0 | 3.15e-01 | 91.2% | 59.4% |
| 3842173 | 109.4.1.394 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMC1_C | 0.51 | 43.0 | 3.11e-01 | 92.2% | 32.8% |
D2
medium
residues 77-182
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 41.0 | 4.45e-01 | 100.0% | 70.0% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 41.0 | 4.85e-01 | 98.1% | 87.3% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 40.0 | 4.31e-01 | 100.0% | 69.9% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.64 | 40.0 | 4.84e-01 | 80.2% | 97.1% |
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 40.0 | 4.64e-01 | 72.6% | 89.2% |
| 4g6iC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.63 | 44.0 | 4.66e-01 | 100.0% | 80.9% |
| 2j5uA02 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.62 | 43.0 | 4.73e-01 | 92.5% | 89.3% |
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.62 | 40.0 | 4.75e-01 | 80.2% | 97.2% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.59 | 39.0 | 4.65e-01 | 77.4% | 98.6% |
| 3laeA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.57 | 30.0 | 3.36e-01 | 72.6% | 64.2% |
| 4q63A00 | 2.40.10.430 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 41.0 | 4.29e-01 | 97.2% | 84.9% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 42.0 | 3.47e-01 | 76.4% | 98.9% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 41.0 | 4.19e-01 | 75.5% | 78.1% |
| 8gz3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 43.0 | 4.59e-01 | 99.1% | 94.6% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.55 | 42.0 | 4.34e-01 | 93.4% | 86.3% |
| 4fvdA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 39.0 | 4.09e-01 | 77.4% | 86.2% |
| 2v4dE01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.53 | 32.0 | 3.50e-01 | 85.8% | 75.0% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.51 | 36.0 | 2.58e-01 | 73.6% | 43.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517355 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.73 | 41.0 | 4.41e-01 | 76.4% | 64.4% |
| 5041953 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 39.0 | 5.06e-01 | 74.5% | 93.3% |
| 3735267 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 47.0 | 5.15e-01 | 86.8% | 90.6% |
| 3398231 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.66 | 48.0 | 3.73e-01 | 74.5% | 87.4% |
| 3938609 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.66 | 33.0 | 4.02e-01 | 76.4% | 75.4% |
| 3393534 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.66 | 47.0 | 3.72e-01 | 74.5% | 90.1% |
| 4141829 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.65 | 37.0 | 4.59e-01 | 79.2% | 96.7% |
| 4058737 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 35.0 | 4.35e-01 | 78.3% | 91.7% |
| 4319764 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.64 | 41.0 | 4.14e-01 | 100.0% | 63.6% |
| 3387360 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 41.0 | 4.51e-01 | 100.0% | 81.2% |
| 3170002 | 1.1.7.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat | 0.62 | 45.0 | 4.40e-01 | 86.8% | 69.6% |
| 4448587 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.61 | 38.0 | 3.65e-01 | 76.4% | 53.6% |
| 3617006 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 47.0 | 4.65e-01 | 100.0% | 81.8% |
| 3575535 | 1.1.7.113 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 | 0.58 | 46.0 | 3.02e-01 | 100.0% | 19.4% |
| 3220497 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.58 | 46.0 | 3.54e-01 | 82.1% | 90.5% |
| 5045636 | 1.1.7.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat | 0.57 | 41.0 | 3.95e-01 | 86.8% | 65.8% |
| 3388311 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.56 | 40.0 | 4.42e-01 | 86.8% | 91.8% |
| 3164932 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.56 | 49.0 | 4.71e-01 | 98.1% | 92.8% |
| 4342812 | 1.1.7.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat | 0.56 | 45.0 | 4.17e-01 | 100.0% | 67.1% |
| 4382401 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.55 | 39.0 | 4.36e-01 | 86.8% | 91.8% |
| 3672433 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 42.0 | 3.03e-01 | 79.2% | 45.2% |
| 4341159 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.55 | 39.0 | 3.56e-01 | 73.6% | 91.4% |
| 3066474 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.55 | 39.0 | 3.21e-01 | 75.5% | 93.8% |
| 4037377 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.54 | 40.0 | 3.89e-01 | 76.4% | 86.1% |
| 3743935 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.54 | 37.0 | 4.24e-01 | 74.5% | 93.8% |
| 2410116 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.54 | 35.0 | 4.02e-01 | 73.6% | 89.7% |
| 5055839 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.53 | 38.0 | 3.80e-01 | 76.4% | 91.8% |
| 4428238 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.52 | 38.0 | 3.61e-01 | 76.4% | 72.0% |
| 5004848 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 36.0 | 3.36e-01 | 72.6% | 98.6% |
| 4598968 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.51 | 41.0 | 3.90e-01 | 86.8% | 82.4% |
D3
medium
residues 325-391
D4
medium
residues 392-530