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CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00215
Bact-VirCG_2015-01t_scaffold_23_prodigal-single.1__X__X__00215
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 58-98_116-164
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.72 | 46.0 | 3.66e-01 | 82.2% | 33.3% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.71 | 46.0 | 3.65e-01 | 82.2% | 33.7% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.70 | 43.0 | 4.25e-01 | 85.6% | 57.9% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.69 | 56.0 | 4.58e-01 | 86.7% | 59.4% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.69 | 55.0 | 4.56e-01 | 85.6% | 49.4% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 40.0 | 4.46e-01 | 78.9% | 73.6% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.66 | 56.0 | 4.58e-01 | 91.1% | 58.6% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.65 | 53.0 | 4.49e-01 | 91.1% | 53.7% |
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 43.0 | 3.22e-01 | 97.8% | 27.2% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.63 | 54.0 | 4.50e-01 | 92.2% | 55.7% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.63 | 49.0 | 4.21e-01 | 85.6% | 53.4% |
| 2pb7A01 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.62 | 52.0 | 4.22e-01 | 93.3% | 69.5% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.61 | 39.0 | 4.33e-01 | 85.6% | 83.8% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.60 | 38.0 | 4.30e-01 | 85.6% | 89.1% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 49.0 | 4.17e-01 | 92.2% | 64.6% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.58 | 48.0 | 4.53e-01 | 100.0% | 74.3% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 41.0 | 4.09e-01 | 100.0% | 71.3% |
| 8a9xA01 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.57 | 32.0 | 3.52e-01 | 80.0% | 65.3% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 45.0 | 3.87e-01 | 100.0% | 55.1% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 35.0 | 2.74e-01 | 78.9% | 30.6% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 35.0 | 3.68e-01 | 91.1% | 70.7% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 38.0 | 3.99e-01 | 100.0% | 80.2% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 37.0 | 4.04e-01 | 100.0% | 86.3% |
| 3n54B03 | 3.30.300.210 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 | 0.54 | 42.0 | 3.66e-01 | 84.4% | 62.9% |
| 4m4xA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 41.0 | 3.73e-01 | 83.3% | 86.5% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.54 | 42.0 | 3.75e-01 | 83.3% | 82.5% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 37.0 | 3.76e-01 | 100.0% | 71.1% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.54 | 40.0 | 3.59e-01 | 80.0% | 68.2% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.53 | 32.0 | 3.06e-01 | 82.2% | 48.6% |
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 27.0 | 2.63e-01 | 82.2% | 38.1% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 35.0 | 3.51e-01 | 83.3% | 67.0% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 39.0 | 3.83e-01 | 84.4% | 95.1% |
| 7qh7701 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.51 | 40.0 | 3.16e-01 | 85.6% | 64.6% |
| 4ofkB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.06e-01 | 91.1% | 53.8% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.80 | 61.0 | 5.36e-01 | 91.1% | 55.4% |
| 5077347 | 2003.1.5.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 | 0.74 | 36.0 | 2.79e-01 | 80.0% | 22.7% |
| 5080512 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 67.0 | 4.48e-01 | 100.0% | 34.5% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.72 | 57.0 | 4.70e-01 | 85.6% | 48.4% |
| 5040331 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 65.0 | 5.48e-01 | 96.7% | 71.0% |
| 4954552 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 60.0 | 4.91e-01 | 90.0% | 53.1% |
| 4954551 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 65.0 | 5.60e-01 | 100.0% | 68.9% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.69 | 56.0 | 4.59e-01 | 86.7% | 60.0% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.69 | 56.0 | 4.59e-01 | 88.9% | 48.8% |
| 3502370 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.69 | 63.0 | 5.16e-01 | 100.0% | 60.0% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 53.0 | 4.63e-01 | 91.1% | 56.2% |
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 52.0 | 4.70e-01 | 91.1% | 59.7% |
| 3265120 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 57.0 | 4.48e-01 | 91.1% | 45.7% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.67 | 55.0 | 4.58e-01 | 91.1% | 51.6% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 57.0 | 4.62e-01 | 91.1% | 51.9% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.66 | 61.0 | 4.26e-01 | 100.0% | 34.1% |
| 5078836 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 55.0 | 5.12e-01 | 92.2% | 72.7% |
| 3264744 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.65 | 54.0 | 4.30e-01 | 91.1% | 45.7% |
| 3741417 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.65 | 40.0 | 4.90e-01 | 85.6% | 100.0% |
| 5000462 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.65 | 44.0 | 4.69e-01 | 86.7% | 80.0% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 54.0 | 3.84e-01 | 92.2% | 31.5% |
| 4229029 | 304.9.1.75 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF8436 | 0.64 | 41.0 | 4.36e-01 | 85.6% | 73.8% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.63 | 50.0 | 4.29e-01 | 86.7% | 55.0% |
| 4981806 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.62 | 49.0 | 4.30e-01 | 87.8% | 57.0% |
| 3934937 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.60 | 38.0 | 3.03e-01 | 85.6% | 30.5% |
| 4809346 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.60 | 43.0 | 4.39e-01 | 82.2% | 77.9% |
| 4032433 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.58 | 41.0 | 4.05e-01 | 98.9% | 68.4% |
| 3800974 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 40.0 | 2.87e-01 | 100.0% | 24.2% |
| 4953730 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 30.0 | 2.36e-01 | 83.3% | 22.8% |
| 4346339 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 41.0 | 4.34e-01 | 100.0% | 82.5% |
| 3988189 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 39.0 | 4.16e-01 | 98.9% | 78.8% |
| 3502395 | 2003.1.5.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 | 0.57 | 39.0 | 2.78e-01 | 100.0% | 22.5% |
| 3838547 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 38.0 | 4.06e-01 | 100.0% | 78.5% |
| 4304538 | 2003.1.5.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 | 0.57 | 41.0 | 2.85e-01 | 100.0% | 22.8% |
| 5026971 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.57 | 41.0 | 4.24e-01 | 97.8% | 80.0% |
| 5062146 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.57 | 40.0 | 4.17e-01 | 97.8% | 79.8% |
| 4647496 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.56 | 40.0 | 4.31e-01 | 100.0% | 88.0% |
| 4982756 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.56 | 42.0 | 3.31e-01 | 96.7% | 37.4% |
| 4947405 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.56 | 29.0 | 2.56e-01 | 82.2% | 32.3% |
| 4067121 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.55 | 39.0 | 4.00e-01 | 100.0% | 76.5% |
| 3990261 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.55 | 33.0 | 3.80e-01 | 85.6% | 81.5% |
| 5081005 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.55 | 39.0 | 4.12e-01 | 97.8% | 80.7% |
| 4263573 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.55 | 38.0 | 4.12e-01 | 100.0% | 86.7% |
| 4634052 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.55 | 39.0 | 4.01e-01 | 97.8% | 76.1% |
| 5038047 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.54 | 39.0 | 4.08e-01 | 97.8% | 80.7% |
| 3990367 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.54 | 33.0 | 3.47e-01 | 83.3% | 68.8% |
| 3931929 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.53 | 35.0 | 2.72e-01 | 85.6% | 28.1% |
| 5039693 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.53 | 39.0 | 3.94e-01 | 97.8% | 76.4% |
| 4940816 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 28.0 | 2.77e-01 | 74.4% | 44.2% |
| 3267677 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.90e-01 | 96.7% | 81.2% |
| 4014948 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.52 | 40.0 | 3.95e-01 | 82.2% | 98.9% |
| 330634 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.52 | 38.0 | 3.88e-01 | 100.0% | 76.9% |
| 4126800 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 28.0 | 2.76e-01 | 83.3% | 41.9% |
| 3600613 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.52 | 46.0 | 3.30e-01 | 100.0% | 73.0% |
| 4001482 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.51 | 32.0 | 3.46e-01 | 86.7% | 73.3% |
| 4370102 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.51 | 37.0 | 3.87e-01 | 98.9% | 85.0% |
| 3950403 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.50 | 38.0 | 3.42e-01 | 82.2% | 83.1% |
| 3592631 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.50 | 44.0 | 3.12e-01 | 100.0% | 62.0% |
| 3580652 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 42.0 | 3.06e-01 | 93.3% | 77.1% |
| 3516702 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.50 | 38.0 | 3.00e-01 | 85.6% | 58.9% |
D2
medium
residues 165-312