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CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00226
Bact-VirCG_2015-01t_scaffold_23_prodigal-single.1__X__X__00226
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 34-47_62-189_279-309
Domain cluster:
rep: IMGVR_UViG_3300002514_000850-3300002514-JGI25133J35611_100016089__D507-665
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01973.24 best | MptE-like | 67.3 | 2.10e-18 | 78.6% | 72.5% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5b1hA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 33.0 | 4.26e-01 | 85.5% | 88.2% |
| 5cvcA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 33.0 | 4.29e-01 | 73.4% | 93.8% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 35.0 | 4.23e-01 | 86.1% | 87.4% |
| 5i7wA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 35.0 | 4.19e-01 | 87.9% | 86.0% |
| 2zsjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 33.0 | 4.17e-01 | 86.1% | 93.8% |
| 1p5jA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 33.0 | 4.15e-01 | 86.1% | 93.8% |
| 3qz6A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.57 | 45.0 | 4.02e-01 | 83.8% | 93.8% |
| 6xo2A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 35.0 | 4.23e-01 | 87.3% | 97.1% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 32.0 | 3.95e-01 | 86.7% | 93.9% |
| 1xr4B01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.56 | 42.0 | 3.77e-01 | 77.5% | 76.3% |
| 3lk7A03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.54 | 38.0 | 4.28e-01 | 72.3% | 100.0% |
| 2b3zA02 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.54 | 43.0 | 3.98e-01 | 84.4% | 95.1% |
| 3l0gA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 38.0 | 4.04e-01 | 72.3% | 97.4% |
| 4myrC00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 32.0 | 3.66e-01 | 82.7% | 79.4% |
| 1s2uB00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.54 | 44.0 | 3.75e-01 | 88.4% | 92.0% |
| 1eg2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 3.63e-01 | 83.2% | 97.8% |
| 2q9uB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 38.0 | 3.39e-01 | 74.0% | 88.2% |
| 2qv5A01 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.52 | 44.0 | 4.07e-01 | 92.5% | 93.2% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.52 | 34.0 | 4.10e-01 | 89.0% | 100.0% |
| 3m6mD00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 31.0 | 3.63e-01 | 93.1% | 84.7% |
| 3hebA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 35.0 | 3.79e-01 | 92.5% | 83.1% |
| 3ktoA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 32.0 | 3.68e-01 | 95.4% | 86.9% |
| 1a04A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 31.0 | 3.60e-01 | 93.6% | 83.9% |
| 2jk1A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 33.0 | 3.67e-01 | 91.9% | 82.6% |
| 1kcxA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 45.0 | 3.53e-01 | 97.7% | 89.3% |
| 3lufB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 32.0 | 3.75e-01 | 90.8% | 91.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3840123 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.87 | 84.0 | 6.67e-01 | 100.0% | 85.5% |
| 3386720 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.87 | 84.0 | 6.91e-01 | 100.0% | 95.0% |
| 3386000 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.84 | 82.0 | 6.65e-01 | 100.0% | 89.3% |
| 4610054 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.81 | 78.0 | 6.13e-01 | 100.0% | 89.8% |
| 3838380 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.78 | 74.0 | 6.18e-01 | 100.0% | 90.7% |
| 4224433 | 7555.1.1.0 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related | 0.76 | 56.0 | 5.10e-01 | 81.5% | 59.1% |
| 4927773 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.60 | 45.0 | 3.91e-01 | 78.0% | 81.5% |
| 3289549 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.59 | 34.0 | 3.58e-01 | 87.9% | 60.0% |
| 5054417 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.59 | 33.0 | 3.80e-01 | 89.6% | 73.6% |
| 3958114 | 2003.4.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes | 0.58 | 34.0 | 3.66e-01 | 86.1% | 65.3% |
| 5026429 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.58 | 32.0 | 3.58e-01 | 74.6% | 67.7% |
| 2483388 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.57 | 32.0 | 3.47e-01 | 73.4% | 64.1% |
| 3955591 | 2007.1.3.47 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PF26563 | 0.57 | 32.0 | 3.88e-01 | 89.6% | 84.5% |
| 4959428 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.56 | 45.0 | 4.12e-01 | 84.4% | 96.0% |
| 4663296 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.56 | 44.0 | 4.08e-01 | 83.2% | 97.7% |
| 147673 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.55 | 34.0 | 3.86e-01 | 96.0% | 81.9% |
| 4577003 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.55 | 44.0 | 4.09e-01 | 83.2% | 97.7% |
| 4992215 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.55 | 44.0 | 4.09e-01 | 83.8% | 98.6% |
| 3284891 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.55 | 34.0 | 3.59e-01 | 78.0% | 68.7% |
| 4185336 | 2003.6.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK | 0.54 | 47.0 | 4.14e-01 | 94.2% | 82.3% |
| 4262258 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.54 | 43.0 | 3.98e-01 | 84.4% | 95.1% |
| 4153559 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.54 | 31.0 | 3.65e-01 | 80.9% | 80.0% |
| 3505423 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.54 | 33.0 | 3.78e-01 | 94.2% | 82.4% |
| 3974718 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.54 | 32.0 | 3.43e-01 | 77.5% | 66.7% |
| 3960448 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.53 | 32.0 | 3.81e-01 | 94.2% | 90.9% |
| 4947935 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.53 | 36.0 | 3.91e-01 | 86.7% | 80.0% |
| 2484608 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.53 | 32.0 | 3.36e-01 | 77.5% | 62.8% |
D2
medium
residues 48-61_190-278
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 31.0 | 3.28e-01 | 91.3% | 47.3% |
| 2yn0A00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 40.0 | 3.05e-01 | 96.1% | 31.5% |
| 2panA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.55 | 46.0 | 3.64e-01 | 94.2% | 55.4% |
| 1jykA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 36.0 | 2.85e-01 | 97.1% | 31.0% |
| 3u61C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 3.58e-01 | 96.1% | 52.5% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.52 | 24.0 | 2.79e-01 | 84.5% | 57.7% |
| 2b7oA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 44.0 | 3.13e-01 | 96.1% | 42.6% |
| 8a26A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 45.0 | 3.35e-01 | 100.0% | 67.8% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.72e-01 | 88.3% | 93.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386000 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.84 | 78.0 | 5.51e-01 | 100.0% | 76.2% |
| 3386720 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.83 | 78.0 | 5.52e-01 | 100.0% | 81.1% |
| 3840123 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.81 | 76.0 | 5.25e-01 | 100.0% | 72.9% |
| 4488198 | 7555.1.1.0 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related | 0.80 | 67.0 | 4.90e-01 | 89.3% | 50.4% |
| 2387778 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.66 | 60.0 | 4.31e-01 | 99.0% | 75.8% |
| 4327654 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.61 | 26.0 | 3.23e-01 | 90.3% | 61.7% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.57 | 24.0 | 3.09e-01 | 84.5% | 65.0% |
| 5083603 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.53 | 39.0 | 3.54e-01 | 76.7% | 87.9% |
| 3714022 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.50 | 22.0 | 2.84e-01 | 80.6% | 70.0% |