←Back to structures
CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00228
Bact-VirCG_2015-01t_scaffold_23_prodigal-single.1__X__X__00228
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-173
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 29.8 | 8.10e-07 | 84.6% | 66.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.87 | 83.0 | 7.80e-01 | 99.4% | 97.3% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.85 | 80.0 | 7.50e-01 | 100.0% | 98.4% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.85 | 80.0 | 7.50e-01 | 99.4% | 98.4% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.83 | 79.0 | 7.64e-01 | 100.0% | 98.2% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 77.0 | 7.51e-01 | 98.7% | 98.8% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 75.0 | 6.79e-01 | 100.0% | 97.6% |
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 74.0 | 7.00e-01 | 100.0% | 95.6% |
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.57 | 38.0 | 4.22e-01 | 92.3% | 86.7% |
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.55 | 26.0 | 2.99e-01 | 94.2% | 59.4% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 23.0 | 3.23e-01 | 96.2% | 84.2% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 31.0 | 3.81e-01 | 73.7% | 100.0% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.50 | 31.0 | 3.76e-01 | 84.0% | 97.9% |
| 2hfqA00 | 3.10.510.10 | Alpha Beta › Roll › NE1680-like fold › NE1680-like | 0.50 | 27.0 | 3.54e-01 | 91.0% | 95.3% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.86 | 82.0 | 7.65e-01 | 100.0% | 98.4% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.86 | 81.0 | 7.66e-01 | 98.1% | 98.3% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.86 | 81.0 | 7.62e-01 | 98.1% | 99.4% |
| 3821993 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.85 | 81.0 | 6.69e-01 | 100.0% | 78.3% |
| 4946449 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.85 | 82.0 | 7.62e-01 | 100.0% | 98.9% |
| None | — | 0.85 | 81.0 | 7.73e-01 | 99.4% | 100.0% | |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.85 | 81.0 | 7.58e-01 | 100.0% | 98.4% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.85 | 81.0 | 7.54e-01 | 100.0% | 97.8% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.85 | 80.0 | 7.64e-01 | 99.4% | 98.9% |
| None | — | 0.85 | 80.0 | 7.50e-01 | 99.4% | 98.4% | |
| None | — | 0.84 | 80.0 | 7.56e-01 | 99.4% | 98.9% | |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.84 | 81.0 | 7.54e-01 | 100.0% | 99.5% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 80.0 | 7.63e-01 | 100.0% | 98.9% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 80.0 | 7.16e-01 | 99.4% | 84.9% |
| None | — | 0.84 | 80.0 | 7.52e-01 | 100.0% | 98.9% | |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.84 | 80.0 | 7.34e-01 | 100.0% | 97.4% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 81.0 | 7.54e-01 | 100.0% | 99.5% |
| 5019632 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.84 | 80.0 | 7.01e-01 | 100.0% | 95.9% |
| 5000045 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 80.0 | 7.47e-01 | 100.0% | 97.8% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 78.0 | 7.26e-01 | 96.8% | 94.6% |
| 1117634 | 264.1.1.8 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg | 0.84 | 80.0 | 6.85e-01 | 100.0% | 86.5% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 79.0 | 7.40e-01 | 100.0% | 97.9% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 76.0 | 7.24e-01 | 95.5% | 97.8% |
| 3616225 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 79.0 | 6.91e-01 | 100.0% | 93.6% |
| 3937447 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 79.0 | 7.05e-01 | 100.0% | 97.1% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 79.0 | 7.42e-01 | 100.0% | 97.8% |
| 4951796 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 79.0 | 7.20e-01 | 100.0% | 99.5% |
| 4948034 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.40e-01 | 100.0% | 97.8% |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.34e-01 | 100.0% | 97.3% |
| None | — | 0.83 | 73.0 | 7.10e-01 | 91.7% | 99.4% | |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.39e-01 | 100.0% | 98.4% |
| 4932664 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 79.0 | 7.45e-01 | 100.0% | 98.4% |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.58e-01 | 100.0% | 97.7% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.49e-01 | 100.0% | 99.4% |
| 4951894 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 78.0 | 7.13e-01 | 98.7% | 87.7% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 78.0 | 7.34e-01 | 99.4% | 98.9% |
| 4972305 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.83 | 78.0 | 7.46e-01 | 99.4% | 98.9% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 77.0 | 7.31e-01 | 98.1% | 97.8% |
| 4937535 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.49e-01 | 99.4% | 100.0% |
| 1953031 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 78.0 | 7.50e-01 | 100.0% | 97.1% |
| 3955687 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 76.0 | 7.48e-01 | 96.8% | 100.0% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.42e-01 | 100.0% | 98.9% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.35e-01 | 99.4% | 100.0% |
| 5055911 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.38e-01 | 99.4% | 98.9% |
| 4046553 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 78.0 | 7.53e-01 | 99.4% | 97.6% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 78.0 | 7.29e-01 | 100.0% | 97.8% |
| None | — | 0.82 | 77.0 | 7.52e-01 | 99.4% | 98.2% | |
| 4929565 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 77.0 | 7.34e-01 | 99.4% | 98.9% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 77.0 | 7.27e-01 | 98.7% | 98.9% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 77.0 | 7.21e-01 | 99.4% | 99.5% |
| 3995136 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 61.0 | 6.29e-01 | 76.9% | 98.7% |
| 4031839 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 7.45e-01 | 99.4% | 98.8% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 76.0 | 7.21e-01 | 98.7% | 99.4% |
| 5058094 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.36e-01 | 99.4% | 100.0% |
| 5028063 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 7.39e-01 | 100.0% | 98.3% |
| 3338135 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 76.0 | 7.23e-01 | 100.0% | 96.1% |
| 4965442 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 74.0 | 7.33e-01 | 98.1% | 100.0% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 73.0 | 7.02e-01 | 98.7% | 98.3% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 74.0 | 7.27e-01 | 99.4% | 97.6% |
| 276 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.78 | 74.0 | 7.00e-01 | 100.0% | 95.6% |
| 3483252 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.77 | 54.0 | 5.71e-01 | 71.2% | 95.0% |
| 4991838 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 62.0 | 6.68e-01 | 85.3% | 98.5% |
| 3744887 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.57 | 49.0 | 4.85e-01 | 91.0% | 100.0% |
| 5042268 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 41.0 | 4.60e-01 | 94.2% | 100.0% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 22.0 | 3.31e-01 | 85.9% | 85.9% |