←Back to structures
CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00247
Bact-VirCG_2015-01t_scaffold_23_prodigal-single.1__X__X__00247
Identity
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-139
Domain cluster:
rep: PLM4_65_coex_sep16_scaffold_0_prodigal-single.1__X__X__00073__DFULL
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20935.3 best | DUF6847 | 50.8 | 2.50e-13 | 94.9% | 96.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.92 | 89.0 | 8.55e-01 | 100.0% | 94.7% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.77 | 37.0 | 5.11e-01 | 100.0% | 92.5% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 41.0 | 4.74e-01 | 97.1% | 73.3% |
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.70 | 41.0 | 4.15e-01 | 100.0% | 56.7% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 44.0 | 4.23e-01 | 99.3% | 57.3% |
| 2fonA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 36.0 | 3.73e-01 | 97.8% | 62.0% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.59 | 50.0 | 3.61e-01 | 90.5% | 81.3% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.58 | 44.0 | 4.51e-01 | 92.0% | 81.2% |
| 4mycA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.55 | 48.0 | 3.63e-01 | 93.4% | 54.6% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 45.0 | 3.78e-01 | 94.9% | 93.2% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 48.0 | 3.75e-01 | 100.0% | 76.7% |
| 4nswB01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.50 | 46.0 | 3.66e-01 | 97.1% | 62.5% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.50 | 44.0 | 3.83e-01 | 96.4% | 80.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1269742 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.92 | 89.0 | 8.55e-01 | 100.0% | 94.7% |
| 3782635 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.91 | 88.0 | 8.34e-01 | 100.0% | 98.7% |
| 5044921 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.75 | 47.0 | 4.20e-01 | 94.2% | 47.0% |
| 4026340 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.73 | 47.0 | 4.45e-01 | 100.0% | 55.0% |
| 3735947 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 51.0 | 4.22e-01 | 70.8% | 84.6% |
| 3466552 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.69 | 42.0 | 4.16e-01 | 99.3% | 57.2% |
| 3692017 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.67 | 44.0 | 4.38e-01 | 99.3% | 64.3% |
| 3837882 | 150.1.1.196 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PF27018 | 0.67 | 44.0 | 4.33e-01 | 97.1% | 62.8% |
| 3428878 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.64 | 42.0 | 4.14e-01 | 99.3% | 60.7% |
| 2576218 | 150.1.1.84 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › IMEF_Flp | 0.63 | 40.0 | 4.03e-01 | 97.1% | 61.7% |
| 3468403 | 601.1.2.74 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Rx_N | 0.61 | 39.0 | 3.96e-01 | 97.8% | 63.7% |
| 3882700 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 44.0 | 3.43e-01 | 77.4% | 87.2% |
| 3420563 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.59 | 41.0 | 4.14e-01 | 97.8% | 70.0% |
| 3458391 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.58 | 44.0 | 3.51e-01 | 81.0% | 83.2% |
| 3849660 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.54 | 46.0 | 4.78e-01 | 97.8% | 95.4% |
| 3789156 | 192.29.1.223 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Syntaxin_2 | 0.53 | 50.0 | 4.59e-01 | 97.8% | 100.0% |
| 3661689 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.51 | 34.0 | 3.48e-01 | 93.4% | 68.1% |
| 3495902 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.51 | 47.0 | 3.91e-01 | 97.1% | 66.4% |
| 3479389 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.50 | 46.0 | 4.09e-01 | 100.0% | 71.4% |
| 3739286 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.50 | 46.0 | 3.78e-01 | 97.1% | 71.3% |
D2
medium
residues 216-275