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CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00084

Bact-Vir

CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00084

Identity

Kingdom:
phage

Quality

80.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-221
PDB
Domain cluster: rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00220__D6-190
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08804.17 best gp32 77.1 3.10e-21 94.9% 86.7%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.81 77.0 7.39e-01 100.0% 89.4%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 27.0 4.14e-01 81.2% 100.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 24.0 2.93e-01 85.8% 55.9%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.59 18.0 2.92e-01 86.8% 69.4%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 27.0 3.72e-01 84.3% 91.7%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 29.0 3.85e-01 84.8% 93.3%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 27.0 3.67e-01 92.4% 91.1%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 26.0 3.25e-01 84.8% 78.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3573974 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.84 71.0 7.28e-01 97.5% 91.1%
378 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.82 75.0 7.34e-01 97.0% 89.5%
4995733 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 68.0 6.99e-01 100.0% 93.2%
3511606 3246.1.1.0 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins 0.61 21.0 2.99e-01 90.4% 60.6%
3356732 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.55 26.0 3.31e-01 89.3% 73.3%
3474782 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.54 28.0 3.37e-01 86.8% 72.6%
3289921 11.1.1.424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2771 0.53 23.0 2.73e-01 82.7% 56.3%
3726706 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.52 26.0 3.32e-01 89.3% 78.3%
3524331 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 21.0 2.91e-01 84.3% 73.3%
3677650 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 44.0 3.76e-01 95.9% 76.5%