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CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00111
Bact-VirCG_2015-01t_scaffold_2_prodigal-single.1__X__X__00111
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-78
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.80 | 57.0 | 4.19e-01 | 73.7% | 75.8% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 40.0 | 4.01e-01 | 73.7% | 51.3% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.75 | 50.0 | 3.58e-01 | 75.0% | 24.8% |
| 3apzA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.74 | 58.0 | 3.85e-01 | 84.2% | 27.8% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 48.0 | 3.98e-01 | 71.1% | 69.4% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 51.0 | 5.47e-01 | 78.9% | 89.2% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.70 | 47.0 | 4.23e-01 | 75.0% | 48.6% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 48.0 | 4.39e-01 | 76.3% | 59.2% |
| 2rd3D00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.60 | 43.0 | 3.14e-01 | 75.0% | 83.5% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.60 | 47.0 | 4.44e-01 | 92.1% | 70.0% |
| 2m6bA00 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.56 | 41.0 | 3.36e-01 | 80.3% | 44.7% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 42.0 | 3.56e-01 | 82.9% | 69.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396806 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.84 | 64.0 | 5.96e-01 | 78.9% | 67.8% |
| 3482882 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.79 | 57.0 | 6.32e-01 | 77.6% | 96.7% |
| 4944918 | 150.1.1.208 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › RUBY_RBDX | 0.76 | 49.0 | 3.83e-01 | 75.0% | 33.3% |
| 3274209 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.74 | 58.0 | 4.52e-01 | 88.2% | 39.4% |
| 3736234 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.70 | 46.0 | 4.38e-01 | 78.9% | 56.7% |
| 3482273 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.70 | 55.0 | 4.82e-01 | 88.2% | 57.8% |
| 4980095 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.69 | 55.0 | 4.95e-01 | 89.5% | 61.9% |
| 5054586 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 48.0 | 4.26e-01 | 75.0% | 52.4% |
| 5049185 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.68 | 58.0 | 4.14e-01 | 94.7% | 52.2% |
| 4649114 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.68 | 51.0 | 4.62e-01 | 84.2% | 60.0% |
| 3971610 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.68 | 58.0 | 4.16e-01 | 94.7% | 78.2% |
| 5047335 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.66 | 54.0 | 4.35e-01 | 89.5% | 46.9% |
| 3971536 | 5069.1.1.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB | 0.66 | 55.0 | 4.12e-01 | 89.5% | 87.4% |
| 4573344 | 140.1.1.4 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 | 0.60 | 37.0 | 3.00e-01 | 75.0% | 31.3% |
D2
medium
residues 81-118
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.77 | 64.0 | 6.58e-01 | 97.4% | 100.0% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.69 | 56.0 | 4.72e-01 | 89.5% | 54.8% |
| 3aa0B01 | 1.20.58.570 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain | 0.65 | 53.0 | 4.17e-01 | 97.4% | 42.0% |
| 3kreA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 43.0 | 3.10e-01 | 89.5% | 89.3% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 46.0 | 3.41e-01 | 100.0% | 63.6% |
| 1d7bA00 | 2.60.40.1210 | Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain | 0.57 | 42.0 | 2.84e-01 | 89.5% | 62.2% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.56 | 40.0 | 3.91e-01 | 81.6% | 77.3% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 3.97e-01 | 100.0% | 60.3% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 41.0 | 2.90e-01 | 86.8% | 29.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3343242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.90 | 79.0 | 7.82e-01 | 97.4% | 92.5% |
| 3380132 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.86 | 74.0 | 7.33e-01 | 100.0% | 90.0% |
| 4475754 | 4076.2.1.5 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP | 0.84 | 68.0 | 5.74e-01 | 97.4% | 53.8% |
| 4263982 | 375.1.1.302 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP | 0.83 | 68.0 | 6.04e-01 | 97.4% | 63.6% |
| 5039298 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.83 | 67.0 | 6.95e-01 | 92.1% | 100.0% |
| 3604320 | 375.1.1.50 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 | 0.81 | 66.0 | 6.55e-01 | 92.1% | 92.5% |
| 5046929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 70.0 | 6.42e-01 | 97.4% | 78.0% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 67.0 | 6.16e-01 | 94.7% | 72.0% |
| 3238220 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.80 | 67.0 | 5.54e-01 | 92.1% | 53.8% |
| 4981040 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 64.0 | 6.44e-01 | 100.0% | 92.3% |
| 5034626 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 64.0 | 6.41e-01 | 97.4% | 92.5% |
| 5059205 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 66.0 | 6.57e-01 | 100.0% | 95.0% |
| 5036655 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 63.0 | 5.57e-01 | 94.7% | 60.0% |
| 5066735 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 63.0 | 5.79e-01 | 94.7% | 68.0% |
| 5037997 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 65.0 | 6.40e-01 | 100.0% | 90.0% |
| 3506203 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.77 | 63.0 | 6.47e-01 | 97.4% | 100.0% |
| 5040368 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 59.0 | 6.08e-01 | 97.4% | 100.0% |
| 3922513 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 60.0 | 6.13e-01 | 92.1% | 100.0% |
| 3824691 | 375.3.1.4 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › Zn_ribbon_20 | 0.75 | 64.0 | 5.90e-01 | 97.4% | 74.0% |
| 3164762 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 63.0 | 6.25e-01 | 94.7% | 90.0% |
| 3946860 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 64.0 | 6.11e-01 | 100.0% | 82.2% |
| 3433661 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.73 | 58.0 | 5.78e-01 | 97.4% | 85.0% |
| 4947515 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 59.0 | 5.21e-01 | 97.4% | 80.0% |
| 2793102 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 58.0 | 6.08e-01 | 92.1% | 100.0% |
| 5036396 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 57.0 | 5.67e-01 | 94.7% | 87.2% |
| 3608321 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 59.0 | 5.70e-01 | 100.0% | 84.4% |
| 4932366 | 375.1.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin | 0.69 | 56.0 | 5.58e-01 | 100.0% | 95.0% |
| 3792293 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.69 | 56.0 | 4.28e-01 | 89.5% | 40.0% |
| 3484821 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 49.0 | 4.19e-01 | 81.6% | 72.3% |
| 3730444 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.66 | 50.0 | 3.85e-01 | 100.0% | 33.6% |
| 4025860 | 4050.1.1.1 ↗ | few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F_actin_cap_B | 0.66 | 52.0 | 5.11e-01 | 97.4% | 82.2% |
| 4448455 | 385.1.1.1 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot | 0.64 | 52.0 | 4.17e-01 | 94.7% | 88.7% |
| 5034313 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 47.0 | 4.75e-01 | 92.1% | 94.3% |
| 3892736 | 103.1.1.67 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 | 0.64 | 50.0 | 4.88e-01 | 100.0% | 84.1% |
| 4967822 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 53.0 | 5.30e-01 | 100.0% | 92.5% |
| 3170351 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 52.0 | 4.81e-01 | 97.4% | 74.0% |
| 5054307 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 48.0 | 4.62e-01 | 97.4% | 86.7% |
| 3339815 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 46.0 | 4.54e-01 | 100.0% | 88.9% |
| 3925225 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 45.0 | 4.61e-01 | 89.5% | 97.1% |
| 5043484 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 42.0 | 4.23e-01 | 100.0% | 84.4% |
| 3509135 | 375.1.1.233 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_IFT122_C | 0.55 | 43.0 | 3.58e-01 | 94.7% | 50.7% |
| 4960051 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 41.0 | 2.79e-01 | 100.0% | 20.1% |
| 3733476 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.51 | 39.0 | 2.81e-01 | 97.4% | 81.4% |
| 4063517 | 2498.1.1.40 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M66 | 0.50 | 37.0 | 2.26e-01 | 100.0% | 11.2% |
| 3195996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.50 | 40.0 | 3.43e-01 | 92.1% | 67.7% |
| 5037381 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.50 | 39.0 | 3.73e-01 | 97.4% | 80.0% |