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CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00128
Bact-VirCG_2015-01t_scaffold_2_prodigal-single.1__X__X__00128
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-50
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.74 | 61.0 | 4.41e-01 | 100.0% | 31.6% |
| 2ex3B01 | 6.10.250.960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 62.0 | 5.54e-01 | 100.0% | 98.7% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.73 | 52.0 | 3.38e-01 | 78.0% | 17.5% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.71 | 48.0 | 4.25e-01 | 70.0% | 55.4% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 47.0 | 3.34e-01 | 72.0% | 28.6% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 45.0 | 4.18e-01 | 70.0% | 60.9% |
| 7tjhE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 57.0 | 3.94e-01 | 100.0% | 53.4% |
| 2fzlA02 | 6.10.140.1180 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 39.0 | 3.65e-01 | 100.0% | 48.4% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 44.0 | 3.81e-01 | 72.0% | 51.9% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.64 | 43.0 | 3.11e-01 | 70.0% | 36.0% |
| 1ocsA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.63 | 54.0 | 4.05e-01 | 100.0% | 62.1% |
| 4ertA01 | 1.10.490.160 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.63 | 49.0 | 3.44e-01 | 86.0% | 31.9% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 43.0 | 3.29e-01 | 72.0% | 96.3% |
| 1xt9A00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.62 | 50.0 | 3.35e-01 | 92.0% | 85.6% |
| 5fj8A06 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.61 | 43.0 | 3.10e-01 | 74.0% | 36.7% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.61 | 44.0 | 3.36e-01 | 80.0% | 41.7% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.60 | 47.0 | 4.06e-01 | 100.0% | 94.8% |
| 2l4dA00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.59 | 40.0 | 3.12e-01 | 70.0% | 74.5% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.58 | 42.0 | 3.88e-01 | 76.0% | 85.5% |
| 3r0xA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 3.34e-01 | 88.0% | 57.7% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 49.0 | 3.88e-01 | 100.0% | 90.4% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.55 | 37.0 | 3.46e-01 | 72.0% | 52.9% |
| 2btoA03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 37.0 | 3.64e-01 | 70.0% | 90.7% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.54 | 38.0 | 3.71e-01 | 74.0% | 94.4% |
| 2ou6A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.54 | 47.0 | 3.23e-01 | 100.0% | 35.0% |
| 6tnyB02 | 2.40.50.430 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 42.0 | 3.42e-01 | 98.0% | 97.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963586 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.76 | 65.0 | 4.88e-01 | 100.0% | 63.1% |
| 3353117 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.74 | 66.0 | 4.00e-01 | 100.0% | 16.7% |
| 4951573 | 1174.1.1.1 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › TMEM175 | 0.73 | 64.0 | 4.29e-01 | 100.0% | 47.4% |
| 3999487 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 65.0 | 4.75e-01 | 100.0% | 86.4% |
| 3355320 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.69 | 60.0 | 5.14e-01 | 100.0% | 82.5% |
| 3513717 | 3721.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain | 0.69 | 55.0 | 4.98e-01 | 98.0% | 64.0% |
| 3578099 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.68 | 57.0 | 5.62e-01 | 100.0% | 89.1% |
| 3390239 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.68 | 56.0 | 5.24e-01 | 96.0% | 98.5% |
| 3962760 | 10.18.1.2 ↗ | beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like › DUF1254 | 0.65 | 54.0 | 3.32e-01 | 100.0% | 60.6% |
| 3170204 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.64 | 52.0 | 3.98e-01 | 100.0% | 52.6% |
| 3470112 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.64 | 46.0 | 3.57e-01 | 80.0% | 35.5% |
| 3209602 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.62 | 44.0 | 3.90e-01 | 76.0% | 76.0% |
| 4904977 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.61 | 50.0 | 2.91e-01 | 92.0% | 63.7% |
| 3486887 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.61 | 55.0 | 3.30e-01 | 100.0% | 75.9% |
| 3981239 | 1049.2.1.3 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 | 0.60 | 43.0 | 3.44e-01 | 90.0% | 40.0% |
| 2661271 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.58 | 42.0 | 3.80e-01 | 76.0% | 81.5% |
| 3308318 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.57 | 46.0 | 3.38e-01 | 88.0% | 70.0% |