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CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00173
Bact-VirCG_2015-01t_scaffold_2_prodigal-single.1__X__X__00173
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 111-189
Domain cluster:
rep: gwa1_scaffold_0_prodigal-single.1__X__X__00404__D55-146
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.66 | 53.0 | 5.21e-01 | 100.0% | 81.9% |
| 5inhA04 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.57 | 50.0 | 3.40e-01 | 98.7% | 77.1% |
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.55 | 49.0 | 4.18e-01 | 100.0% | 96.9% |
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.52 | 45.0 | 4.09e-01 | 96.2% | 82.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 52.0 | 5.62e-01 | 97.5% | 92.3% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.64 | 56.0 | 5.30e-01 | 96.2% | 97.9% |
| 4607935 | 378.1.1.29 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › ICEA | 0.63 | 48.0 | 4.12e-01 | 93.7% | 50.8% |
| 2860134 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.57 | 51.0 | 3.37e-01 | 100.0% | 74.3% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.52 | 46.0 | 4.02e-01 | 96.2% | 87.0% |
D2
medium
residues 58-110
Domain cluster:
representative