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CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00275

Bact-Vir

CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00275

Identity

Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-91
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 60.0 6.81e-01 77.6% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 63.0 6.70e-01 85.1% 91.5%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 67.0 5.76e-01 91.0% 59.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 71.0 6.96e-01 94.0% 94.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.80 69.0 5.43e-01 94.0% 58.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 64.0 6.89e-01 89.6% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 65.0 6.65e-01 89.6% 96.9%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.77 68.0 5.32e-01 95.5% 99.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 6.26e-01 80.6% 100.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 6.50e-01 91.0% 100.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 62.0 5.91e-01 86.6% 78.9%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.05e-01 91.0% 56.4%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 4.65e-01 91.0% 45.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.73 59.0 5.73e-01 86.6% 97.3%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.72 61.0 5.24e-01 92.5% 79.8%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 52.0 5.38e-01 77.6% 90.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 58.0 5.62e-01 89.6% 84.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.82e-01 89.6% 89.9%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.70 61.0 5.33e-01 98.5% 72.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.64e-01 89.6% 89.2%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 54.0 5.45e-01 83.6% 97.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.42e-01 92.5% 83.1%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 49.0 4.10e-01 74.6% 63.8%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.69 47.0 3.83e-01 70.1% 70.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.39e-01 88.1% 86.7%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 37.0 4.58e-01 71.6% 94.6%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 48.0 3.85e-01 74.6% 55.2%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 58.0 4.98e-01 98.5% 67.9%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 47.0 4.05e-01 74.6% 69.8%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 54.0 5.35e-01 91.0% 90.0%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 47.0 3.96e-01 76.1% 67.6%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.65 44.0 4.58e-01 70.1% 81.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.89e-01 89.6% 96.2%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.64 53.0 5.09e-01 92.5% 94.7%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 54.0 4.23e-01 97.0% 75.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 5.00e-01 88.1% 96.8%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 3.80e-01 71.6% 98.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.51e-01 83.6% 70.1%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.59 45.0 4.23e-01 83.6% 84.5%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 51.0 3.79e-01 98.5% 78.0%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 42.0 2.83e-01 77.6% 29.9%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.57 42.0 3.69e-01 79.1% 80.2%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.57 47.0 3.81e-01 94.0% 75.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 4.20e-01 83.6% 80.3%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.52e-01 95.5% 70.6%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 48.0 3.02e-01 100.0% 59.4%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.54 45.0 3.67e-01 100.0% 74.1%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 3.33e-01 71.6% 75.8%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 39.0 2.64e-01 80.6% 29.4%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.95e-01 97.0% 87.0%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 37.0 2.81e-01 76.1% 71.3%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.85e-01 83.6% 82.3%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.51e-01 86.6% 66.7%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.49e-01 79.1% 82.1%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.84 72.0 6.20e-01 91.0% 64.0%
4029344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 69.0 5.27e-01 91.0% 71.0%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 70.0 4.95e-01 91.0% 37.2%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 70.0 6.75e-01 92.5% 90.5%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 68.0 5.94e-01 89.6% 65.3%
3766659 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 68.0 7.17e-01 92.5% 100.0%
2527304 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 67.0 7.04e-01 89.6% 98.4%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 67.0 6.49e-01 89.6% 100.0%
3167531 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.80 69.0 5.43e-01 94.0% 57.0%
4937389 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.80 67.0 5.59e-01 91.0% 54.5%
3185466 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.80 67.0 4.73e-01 92.5% 40.5%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.79 67.0 6.08e-01 92.5% 90.0%
4002985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 67.0 7.07e-01 89.6% 100.0%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 65.0 5.39e-01 89.6% 64.3%
3451173 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.06e-01 92.5% 80.0%
3519884 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.78 66.0 5.70e-01 91.0% 87.0%
3786396 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.78 68.0 5.38e-01 94.0% 55.4%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.78 66.0 5.94e-01 92.5% 67.8%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.78 67.0 5.62e-01 92.5% 66.7%
3932647 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 67.0 6.15e-01 94.0% 81.2%
3721062 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.78 63.0 5.82e-01 88.1% 85.9%
3205559 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.77 65.0 5.04e-01 92.5% 55.9%
3184235 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.77 69.0 5.28e-01 97.0% 53.1%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.77 66.0 5.59e-01 91.0% 61.9%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.77 66.0 6.20e-01 91.0% 80.0%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.77 66.0 5.17e-01 92.5% 46.9%
3553413 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 64.0 5.89e-01 89.6% 76.5%
4565837 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.77 66.0 5.82e-01 92.5% 65.3%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 64.0 4.39e-01 89.6% 30.2%
647 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 64.0 5.05e-01 91.0% 56.4%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 61.0 6.15e-01 86.6% 88.2%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.65e-01 91.0% 100.0%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 63.0 5.14e-01 89.6% 55.0%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.42e-01 92.5% 67.3%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 64.0 5.84e-01 94.0% 88.9%
3730011 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.75 66.0 5.16e-01 97.0% 52.9%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.74 63.0 5.64e-01 94.0% 75.8%
4250193 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.74 61.0 5.57e-01 91.0% 77.8%
5053224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.95e-01 83.6% 100.0%
1175108 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.73 62.0 5.13e-01 91.0% 67.9%
3924975 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.72 60.0 5.69e-01 91.0% 81.2%
3492557 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 62.0 5.39e-01 94.0% 66.0%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.72 60.0 4.94e-01 91.0% 55.8%
3232582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.46e-01 94.0% 71.6%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 60.0 5.44e-01 91.0% 77.8%
4519674 4.1.1.186 beta barrels › SH3 › SH3 › SH3 › DUF5397 0.72 56.0 5.99e-01 86.6% 98.3%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 61.0 5.75e-01 94.0% 81.2%
3842363 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.71 61.0 5.18e-01 95.5% 84.5%
3961706 4.1.1.161 beta barrels › SH3 › SH3 › SH3 › DUF4178 0.71 56.0 5.73e-01 83.6% 92.3%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.71 58.0 5.62e-01 89.6% 84.0%
3770803 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.71 60.0 5.14e-01 95.5% 84.5%
608 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.70 61.0 5.33e-01 98.5% 72.1%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.70 58.0 5.55e-01 92.5% 95.0%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.70 58.0 5.73e-01 89.6% 88.6%
3720660 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.56e-01 89.6% 88.0%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.69 57.0 5.35e-01 89.6% 76.2%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 58.0 5.34e-01 92.5% 75.3%
3667278 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.69 51.0 4.14e-01 80.6% 63.8%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.68 56.0 5.76e-01 89.6% 98.4%
3819397 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.68 57.0 5.43e-01 92.5% 81.2%
591 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.68 56.0 5.39e-01 89.6% 86.8%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 55.0 4.97e-01 92.5% 74.7%
3838288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 48.0 3.99e-01 76.1% 80.9%
3848485 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.66 55.0 4.39e-01 92.5% 72.6%
4055974 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.66 57.0 4.70e-01 98.5% 79.2%
1557343 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 54.0 5.35e-01 91.0% 90.0%
3173156 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.65 54.0 5.13e-01 92.5% 83.7%
3636717 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 45.0 2.91e-01 79.1% 31.8%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 43.0 3.45e-01 73.1% 50.4%
3938060 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 45.0 3.33e-01 79.1% 48.0%
5082048 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.59 48.0 3.59e-01 94.0% 97.4%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.97e-01 82.1% 70.5%
3271274 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.55e-01 74.6% 93.3%
4033432 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 43.0 4.51e-01 83.6% 96.7%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.75e-01 73.1% 86.7%
3953959 4.1.1.424 beta barrels › SH3 › SH3 › SH3 › PF29823 0.55 37.0 4.15e-01 70.1% 100.0%
3985617 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 37.0 3.73e-01 76.1% 72.9%
4938033 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 39.0 3.43e-01 83.6% 90.8%
3693330 511.1.1.2 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 0.51 36.0 2.80e-01 76.1% 61.9%