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CG_2015-01t_scaffold_40_prodigal-single.1__X__X__00340

Bact-Vir

CG_2015-01t_scaffold_40_prodigal-single.1__X__X__00340

Identity

Kingdom:
phage

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-188
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zmbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.64 44.0 3.28e-01 72.3% 89.5%
4hy1A02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 51.0 4.40e-01 96.8% 67.1%
3lnuA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 52.0 4.45e-01 98.9% 87.0%
1yzfA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.60 42.0 3.38e-01 74.5% 94.4%
3ltoA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 44.0 3.66e-01 96.8% 46.1%
4uskA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 45.0 3.61e-01 91.5% 44.0%
3ds8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 39.0 2.93e-01 74.5% 94.9%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.08e-01 92.6% 94.2%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.72e-01 83.0% 96.8%
7vm0B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 37.0 2.87e-01 78.7% 99.6%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.51 27.0 3.44e-01 91.5% 97.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4144072 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.63 46.0 3.82e-01 96.8% 42.9%
3735348 221.1.1.110 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_2 0.57 28.0 2.91e-01 77.7% 47.1%
3215222 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.57 40.0 3.44e-01 72.3% 74.7%
5058165 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.56 37.0 3.89e-01 79.8% 74.1%
None — 0.56 46.0 3.01e-01 92.6% 80.2%
3353483 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.56 46.0 3.65e-01 91.5% 45.0%
3245317 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.56 38.0 3.49e-01 71.3% 81.5%
3220120 226.1.1.2 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.55 39.0 3.31e-01 72.3% 70.3%
3211943 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.55 38.0 3.34e-01 73.4% 72.7%
3398736 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.54 38.0 3.44e-01 72.3% 80.0%
3244180 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.54 40.0 3.14e-01 77.7% 46.5%
5053057 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 45.0 3.00e-01 92.6% 80.2%
3224101 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.54 37.0 3.20e-01 71.3% 63.9%
3704624 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 41.0 3.39e-01 81.9% 65.9%
3574403 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 38.0 2.88e-01 75.5% 34.4%
3392785 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.52 38.0 3.52e-01 78.7% 71.2%
3924164 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.52 39.0 3.58e-01 79.8% 67.2%
4650168 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.52 36.0 3.33e-01 72.3% 66.4%
3619400 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.52 38.0 3.42e-01 77.7% 65.2%
3464903 226.1.1.2 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.51 36.0 3.00e-01 72.3% 72.4%
3627917 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.51 36.0 2.95e-01 73.4% 51.1%
4956249 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 41.0 3.02e-01 90.4% 90.4%
3794595 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.50 35.0 2.64e-01 73.4% 33.5%
3675866 109.27.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BTB 0.50 35.0 2.94e-01 75.5% 47.4%
D2 medium residues 22-61
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.69 50.0 3.16e-01 80.0% 43.0%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 44.0 3.33e-01 77.5% 25.5%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 49.0 3.95e-01 100.0% 83.7%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.61 49.0 3.53e-01 95.0% 55.6%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.59 46.0 3.95e-01 100.0% 50.7%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.59 41.0 3.74e-01 100.0% 50.8%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 43.0 3.39e-01 85.0% 49.0%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.59 44.0 2.83e-01 95.0% 15.2%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.59 39.0 3.28e-01 72.5% 33.7%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 44.0 2.79e-01 97.5% 15.8%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.58 48.0 3.03e-01 100.0% 55.1%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.57 42.0 3.75e-01 95.0% 85.9%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 45.0 3.25e-01 97.5% 28.5%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 46.0 3.21e-01 97.5% 64.5%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.11e-01 100.0% 46.5%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.54 44.0 2.77e-01 100.0% 20.8%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.94e-01 100.0% 31.1%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 40.0 3.13e-01 90.0% 80.0%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.54 46.0 3.84e-01 95.0% 79.4%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.53 41.0 3.53e-01 97.5% 48.8%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 45.0 3.36e-01 95.0% 41.0%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 37.0 2.69e-01 97.5% 21.2%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 42.0 3.23e-01 92.5% 49.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.03e-01 100.0% 59.4%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.52 42.0 2.92e-01 95.0% 73.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.52 42.0 3.23e-01 100.0% 53.2%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 2.93e-01 100.0% 46.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.18e-01 97.5% 45.0%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 41.0 2.95e-01 100.0% 27.0%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.61e-01 100.0% 67.7%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.52 38.0 2.76e-01 97.5% 63.3%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.65e-01 97.5% 80.3%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.17e-01 100.0% 56.5%
1vehA01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.51 37.0 3.27e-01 95.0% 48.0%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.54e-01 100.0% 19.8%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.51e-01 90.0% 34.7%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 2.59e-01 100.0% 20.5%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.04e-01 100.0% 51.7%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.50 41.0 3.25e-01 100.0% 42.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3661638 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.75 58.0 4.47e-01 100.0% 37.9%
3996344 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.73 52.0 4.70e-01 90.0% 53.3%
3641903 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.69 48.0 4.87e-01 85.0% 75.0%
3818050 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.69 52.0 4.36e-01 100.0% 45.0%
3322159 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.69 52.0 3.90e-01 100.0% 31.3%
3318217 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.68 52.0 4.32e-01 100.0% 45.0%
3781870 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.68 52.0 4.22e-01 100.0% 42.4%
3423636 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.66 51.0 4.02e-01 100.0% 37.9%
3679276 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.66 50.0 4.49e-01 100.0% 57.1%
4523828 101.26.1.2 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.66 51.0 3.73e-01 100.0% 40.7%
4274656 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.65 51.0 3.58e-01 100.0% 25.7%
3635617 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.65 51.0 4.99e-01 95.0% 88.9%
3644183 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 43.0 3.70e-01 85.0% 42.2%
2782521 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.64 48.0 4.50e-01 100.0% 65.5%
6784 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.63 49.0 3.98e-01 100.0% 42.4%
4944834 3625.1.1.0 ↗ alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain 0.63 52.0 3.90e-01 100.0% 80.0%
4212883 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.62 47.0 3.05e-01 87.5% 84.9%
4033997 4070.1.1.3 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › DUF3267 0.61 42.0 2.93e-01 75.0% 78.1%
3717848 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.60 47.0 2.59e-01 95.0% 11.8%
3695634 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.60 46.0 2.98e-01 87.5% 80.4%
3601501 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.60 45.0 2.45e-01 95.0% 7.9%
4015000 7573.1.1.0 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.59 46.0 2.94e-01 87.5% 81.0%
3380863 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.59 42.0 2.32e-01 77.5% 6.2%
3605661 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.59 44.0 2.66e-01 95.0% 22.9%
5041948 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.58 42.0 2.44e-01 92.5% 13.0%
3609205 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.58 44.0 2.75e-01 92.5% 18.9%
3742561 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.58 44.0 2.90e-01 92.5% 81.9%
3417192 327.11.2.27 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.57 37.0 3.57e-01 72.5% 50.0%
3213981 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 39.0 2.35e-01 80.0% 11.8%
3924318 6166.1.1.0 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.57 46.0 3.02e-01 97.5% 65.6%
4959927 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 39.0 2.61e-01 97.5% 17.6%
3386835 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.16e-01 100.0% 45.6%
3717029 109.4.1.116 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc 0.56 37.0 2.12e-01 100.0% 5.7%
3200582 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.56 46.0 3.35e-01 100.0% 67.2%
3523834 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 46.0 2.71e-01 100.0% 90.7%
4028937 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.56 43.0 2.36e-01 92.5% 4.8%
3924998 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 45.0 2.70e-01 100.0% 35.2%
3888499 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.55 44.0 2.83e-01 92.5% 78.2%
3519143 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 40.0 2.43e-01 80.0% 12.8%
3622028 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 41.0 2.86e-01 85.0% 90.7%
3518019 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 42.0 3.08e-01 100.0% 62.1%
3480534 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.32e-01 100.0% 72.5%
5078108 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.54 39.0 2.51e-01 90.0% 13.7%
3893117 101.1.2.564 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27514 0.53 46.0 3.96e-01 100.0% 87.7%
3364928 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.53 39.0 2.39e-01 95.0% 23.2%
3727253 3922.1.1.250 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › ATG14 0.53 40.0 2.43e-01 92.5% 29.3%
4014690 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.52 35.0 2.22e-01 75.0% 11.2%
3209636 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 36.0 2.99e-01 82.5% 35.6%
4091138 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.52 35.0 2.86e-01 72.5% 85.6%
3690229 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.52 41.0 2.72e-01 100.0% 21.4%
3188358 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.36e-01 92.5% 40.5%
4964147 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.51 42.0 3.30e-01 100.0% 78.9%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.51 39.0 2.59e-01 100.0% 93.3%
5068497 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.51 42.0 3.14e-01 100.0% 51.7%
3993311 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.51 39.0 2.88e-01 97.5% 30.4%
3598920 7573.1.1.0 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.51 40.0 2.60e-01 97.5% 21.8%
4809699 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.51 38.0 3.36e-01 85.0% 52.3%
4033792 101.1.2.214 ↗ alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.51 40.0 2.96e-01 100.0% 48.1%
3471111 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.51 40.0 2.60e-01 100.0% 20.1%
4067342 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.50 40.0 2.44e-01 95.0% 19.5%
5048181 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.50 41.0 2.83e-01 100.0% 57.1%
4982514 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.50 33.0 2.96e-01 70.0% 37.3%
5080131 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.50 43.0 3.11e-01 100.0% 50.0%
D3 medium residues 199-234_263-326
PDB
D4 medium residues 327-430
PDB