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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00055
Bact-VirCG_2015-01t_scaffold_8_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-96
Domain cluster:
rep: MN428053.1__QFP96650.1__SEA_DENISE_34__00034__D8-66
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 57.0 | 5.57e-01 | 100.0% | 66.7% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.81 | 61.0 | 5.69e-01 | 100.0% | 64.9% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 59.0 | 6.57e-01 | 100.0% | 98.0% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 61.0 | 6.56e-01 | 96.8% | 98.1% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 54.0 | 4.75e-01 | 100.0% | 53.3% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 56.0 | 5.72e-01 | 100.0% | 82.3% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 58.0 | 5.89e-01 | 100.0% | 90.3% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.70 | 64.0 | 6.08e-01 | 100.0% | 91.9% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.69 | 63.0 | 5.82e-01 | 100.0% | 87.3% |
| 3vygD00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 63.0 | 5.00e-01 | 100.0% | 73.1% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 46.0 | 4.98e-01 | 98.4% | 90.0% |
| 1dj7B00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 61.0 | 5.78e-01 | 100.0% | 95.9% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.65 | 58.0 | 4.63e-01 | 100.0% | 59.1% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.65 | 53.0 | 4.48e-01 | 100.0% | 53.2% |
| 1vw4I00 | 2.40.150.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 | 0.62 | 53.0 | 4.31e-01 | 98.4% | 64.0% |
| 3dlbB03 | 2.170.260.50 | Mainly Beta › Beta Complex › paz domain › | 0.59 | 51.0 | 4.66e-01 | 100.0% | 86.2% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 4.25e-01 | 100.0% | 66.3% |
| 1mr1D00 | 3.10.390.10 | Alpha Beta › Roll › SAND domain › SAND domain-like | 0.58 | 52.0 | 4.48e-01 | 98.4% | 74.0% |
| 1yudA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 45.0 | 3.51e-01 | 93.7% | 78.7% |
| 4rlzA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.56 | 44.0 | 3.70e-01 | 87.3% | 95.5% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 38.0 | 3.54e-01 | 100.0% | 54.0% |
| 1wmzA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.53 | 46.0 | 3.62e-01 | 100.0% | 63.6% |
| 1jznA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.53 | 45.0 | 3.61e-01 | 100.0% | 66.7% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.52 | 36.0 | 2.16e-01 | 76.2% | 40.7% |
| 2bhvB01 | 2.40.128.260 | Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI | 0.52 | 40.0 | 3.11e-01 | 88.9% | 67.1% |
| 5ew6A01 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.52 | 45.0 | 3.66e-01 | 100.0% | 68.9% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 33.0 | 2.25e-01 | 100.0% | 17.5% |
| 2or0B02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.51 | 39.0 | 3.44e-01 | 87.3% | 99.0% |
| 4yliE00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.50 | 44.0 | 3.37e-01 | 100.0% | 57.0% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.50 | 41.0 | 3.83e-01 | 92.1% | 73.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781710 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.83 | 66.0 | 6.00e-01 | 100.0% | 66.3% |
| 4078120 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.82 | 65.0 | 6.98e-01 | 100.0% | 96.4% |
| 3846130 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.77 | 63.0 | 4.27e-01 | 100.0% | 26.8% |
| 3853598 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.76 | 62.0 | 5.71e-01 | 100.0% | 68.8% |
| 4029199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 68.0 | 3.74e-01 | 100.0% | 7.7% |
| 3754343 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.74 | 60.0 | 5.65e-01 | 100.0% | 73.3% |
| 3680492 | 4.1.1.298 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26133 | 0.73 | 64.0 | 5.10e-01 | 96.8% | 68.0% |
| 5035934 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.73 | 52.0 | 5.20e-01 | 100.0% | 72.3% |
| 3970000 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 64.0 | 5.43e-01 | 100.0% | 67.0% |
| 3639629 | 4.1.1.312 ↗ | beta barrels › SH3 › SH3 › SH3 › Med13_N | 0.70 | 64.0 | 4.65e-01 | 100.0% | 54.5% |
| 4033907 | 4.1.1.280 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4176 | 0.70 | 60.0 | 5.20e-01 | 100.0% | 62.1% |
| 3434219 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.70 | 64.0 | 5.47e-01 | 100.0% | 65.3% |
| 3605539 | 708.1.2.3 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 | 0.69 | 52.0 | 4.41e-01 | 88.9% | 50.0% |
| 3272197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 63.0 | 5.25e-01 | 100.0% | 62.9% |
| 3687932 | 708.1.2.3 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 | 0.69 | 52.0 | 4.13e-01 | 88.9% | 41.7% |
| 3813762 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.69 | 61.0 | 6.03e-01 | 96.8% | 90.8% |
| 3212093 | 708.1.2.3 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 | 0.69 | 52.0 | 4.24e-01 | 88.9% | 45.5% |
| 3350974 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.68 | 51.0 | 4.60e-01 | 88.9% | 58.8% |
| 3427044 | 4.1.1.36 ↗ | beta barrels › SH3 › SH3 › SH3 › FeThRed_A | 0.68 | 64.0 | 5.55e-01 | 100.0% | 85.6% |
| 3787284 | 708.1.2.3 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 | 0.68 | 51.0 | 4.26e-01 | 88.9% | 47.6% |
| 4549698 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.68 | 59.0 | 5.09e-01 | 100.0% | 63.2% |
| 3937006 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 61.0 | 5.72e-01 | 100.0% | 89.7% |
| 2641782 | 3174.1.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 | 0.67 | 60.0 | 4.83e-01 | 100.0% | 68.1% |
| 5080798 | 4.17.1.0 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like | 0.67 | 60.0 | 5.64e-01 | 100.0% | 84.0% |
| 3929341 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.66 | 57.0 | 5.27e-01 | 96.8% | 85.0% |
| 3761319 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.66 | 59.0 | 5.88e-01 | 100.0% | 93.8% |
| 3734457 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.66 | 59.0 | 3.84e-01 | 100.0% | 43.0% |
| 3198505 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 59.0 | 4.36e-01 | 100.0% | 66.5% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.64 | 59.0 | 5.44e-01 | 100.0% | 82.5% |
| 4622062 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 3.68e-01 | 100.0% | 31.9% |
| 4581369 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.62 | 54.0 | 4.60e-01 | 100.0% | 71.4% |
| 3398219 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.61 | 49.0 | 4.39e-01 | 100.0% | 61.1% |
| 2978978 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 53.0 | 5.03e-01 | 100.0% | 82.7% |
| 3565356 | 206.1.1.13 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase | 0.60 | 49.0 | 3.37e-01 | 95.2% | 53.2% |
| 3729690 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.59 | 54.0 | 4.69e-01 | 100.0% | 80.0% |
| 3586430 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.58 | 46.0 | 3.09e-01 | 93.7% | 53.9% |
| 3389662 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.57 | 50.0 | 4.61e-01 | 100.0% | 76.2% |
| 3498835 | 223.1.1.114 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30393 | 0.57 | 46.0 | 3.08e-01 | 87.3% | 46.4% |
| 4964843 | 236.1.1.0 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain | 0.57 | 49.0 | 3.65e-01 | 95.2% | 66.9% |
| 5049980 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.56 | 48.0 | 3.45e-01 | 100.0% | 46.0% |
| 3485761 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 3.52e-01 | 100.0% | 46.1% |
| 3962554 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.55 | 48.0 | 3.43e-01 | 95.2% | 53.7% |
| 3221126 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 41.0 | 3.43e-01 | 100.0% | 46.7% |
| 3417299 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.53 | 36.0 | 2.95e-01 | 98.4% | 35.4% |
| 5013275 | 2008.1.1.212 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27326 | 0.52 | 40.0 | 3.02e-01 | 92.1% | 93.3% |
| 150837 | 714.1.1.1 ↗ | beta sandwiches › N-utilization substance G protein NusG, insert domain › N-utilization substance G protein NusG, insert domain › N-utilization substance G protein NusG, insert domain › NusG_II | 0.50 | 41.0 | 3.90e-01 | 92.1% | 77.0% |