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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00066

Bact-Vir

CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00066

Identity

Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.34e-01 100.0% 44.4%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 52.0 4.11e-01 100.0% 40.4%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 46.0 3.07e-01 72.9% 40.5%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.65 49.0 4.27e-01 100.0% 50.6%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.65 54.0 4.49e-01 100.0% 55.3%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.65 44.0 2.82e-01 91.7% 14.2%
2x8xX03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 47.0 4.09e-01 100.0% 49.4%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.63 50.0 3.40e-01 100.0% 64.5%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 51.0 4.12e-01 100.0% 44.7%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.63 50.0 4.14e-01 100.0% 46.0%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.63 48.0 3.58e-01 95.8% 30.7%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.14e-01 95.8% 47.5%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 48.0 4.03e-01 100.0% 48.3%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 47.0 3.25e-01 87.5% 40.2%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.05e-01 95.8% 47.1%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 46.0 2.95e-01 83.3% 46.1%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.61 48.0 3.91e-01 100.0% 43.4%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 47.0 4.12e-01 100.0% 56.1%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 50.0 3.71e-01 100.0% 35.0%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 47.0 3.20e-01 95.8% 34.0%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 49.0 4.05e-01 100.0% 51.1%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 44.0 2.99e-01 87.5% 45.7%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 43.0 3.51e-01 95.8% 38.6%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 49.0 3.01e-01 95.8% 15.3%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 3.67e-01 100.0% 42.7%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 46.0 3.80e-01 97.9% 61.8%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.38e-01 100.0% 39.6%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 45.0 3.68e-01 100.0% 61.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.35e-01 97.9% 38.5%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.49e-01 100.0% 44.0%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.54 42.0 2.94e-01 97.9% 24.4%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.72e-01 100.0% 59.2%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 44.0 3.25e-01 100.0% 48.9%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 38.0 2.95e-01 81.2% 35.8%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.11e-01 100.0% 97.7%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.52 42.0 3.46e-01 93.8% 57.0%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.36e-01 100.0% 44.7%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.95e-01 93.8% 68.3%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 39.0 2.60e-01 97.9% 30.6%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 40.0 2.97e-01 97.9% 76.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4405445 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.75 58.0 5.21e-01 100.0% 60.0%
4931409 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 60.0 4.35e-01 89.6% 68.5%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.70 58.0 4.70e-01 100.0% 47.9%
3717787 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 57.0 3.33e-01 100.0% 11.1%
3236416 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.69 56.0 3.40e-01 95.8% 28.1%
4635289 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.68 49.0 2.89e-01 79.2% 44.9%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.68 57.0 4.72e-01 100.0% 52.2%
3932435 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.68 56.0 3.41e-01 95.8% 30.1%
4956189 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.67 51.0 4.43e-01 95.8% 52.5%
3613897 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.67 54.0 4.95e-01 95.8% 67.7%
5045252 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.65 50.0 4.08e-01 100.0% 43.0%
3038102 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.64 47.0 4.59e-01 100.0% 73.2%
4888824 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.64 48.0 3.68e-01 100.0% 33.6%
4933755 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 49.0 3.79e-01 93.8% 36.0%
167276 304.5.1.8 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3240 0.62 48.0 4.02e-01 100.0% 47.8%
5002185 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 49.0 3.30e-01 95.8% 31.2%
3169451 109.4.1.3193 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, Suf, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N 0.61 45.0 2.52e-01 79.2% 18.0%
4396101 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.61 43.0 2.55e-01 77.1% 49.3%
4089814 327.13.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.61 52.0 3.69e-01 100.0% 93.7%
3666034 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.61 48.0 3.79e-01 100.0% 40.0%
4444422 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 51.0 3.87e-01 97.9% 50.4%
3927041 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.60 48.0 3.73e-01 100.0% 53.1%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.60 50.0 3.07e-01 100.0% 57.8%
3603213 2002.1.1.70 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glu_synthase 0.59 41.0 2.41e-01 72.9% 8.2%
4666185 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.59 43.0 2.50e-01 77.1% 46.0%
4979109 2006.1.4.56 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 0.58 50.0 3.80e-01 100.0% 72.3%
3602563 2007.1.5.14 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › PF27247 0.58 41.0 3.14e-01 77.1% 92.8%
3589192 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.58 42.0 3.61e-01 77.1% 65.0%
3471065 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 44.0 2.61e-01 87.5% 32.1%
3963812 3170.1.1.0 a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 0.57 42.0 3.35e-01 83.3% 59.1%
166476 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.57 42.0 3.37e-01 100.0% 39.2%
5032176 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 46.0 4.40e-01 97.9% 76.7%
3494833 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 45.0 2.69e-01 97.9% 24.2%
3404903 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 46.0 3.14e-01 93.8% 50.3%
4938548 3010.1.1.2 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.57 48.0 3.63e-01 97.9% 98.3%
3827631 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 43.0 3.25e-01 100.0% 31.4%
4241274 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 42.0 2.51e-01 87.5% 29.9%
4189845 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.55 42.0 2.77e-01 83.3% 18.2%
3455763 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.64e-01 100.0% 65.5%
10062 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.55 46.0 2.96e-01 97.9% 74.6%
3491344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.55e-01 95.8% 47.6%
3342167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.22e-01 100.0% 29.1%
4319690 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 44.0 3.40e-01 95.8% 73.3%
4223395 4967.1.1.25 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.53 45.0 2.67e-01 97.9% 33.2%
4058338 225.1.1.2 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90,HATPase_c_3 0.53 42.0 2.76e-01 89.6% 57.5%
5019602 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 42.0 3.29e-01 95.8% 44.2%
5050213 192.2.1.87 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.53 38.0 2.63e-01 79.2% 29.5%
4116735 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.53 39.0 3.26e-01 100.0% 43.2%
3444497 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 39.0 2.50e-01 81.2% 33.7%
3212167 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.52 42.0 2.54e-01 87.5% 58.4%
3317524 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.52 40.0 2.82e-01 100.0% 56.4%
4991076 2487.1.1.9 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.52 37.0 2.47e-01 97.9% 16.6%
4487943 304.17.1.1 a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG 0.52 40.0 3.00e-01 87.5% 57.7%
3787050 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 41.0 3.47e-01 100.0% 87.4%
4486052 304.48.1.39 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.51 35.0 2.20e-01 75.0% 19.7%
3287591 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 36.0 2.09e-01 85.4% 38.8%
3200844 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 40.0 3.02e-01 95.8% 61.4%