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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00099
Bact-VirCG_2015-01t_scaffold_8_prodigal-single.1__X__X__00099
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-81
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zxzB00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.90 | 67.0 | 4.93e-01 | 93.8% | 33.0% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.88 | 62.0 | 5.09e-01 | 93.8% | 43.1% |
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.88 | 63.0 | 4.76e-01 | 93.8% | 34.9% |
| 3e3uA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.86 | 66.0 | 4.82e-01 | 93.8% | 33.2% |
| 3qu1A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.86 | 63.0 | 4.83e-01 | 98.8% | 36.9% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.80 | 62.0 | 4.94e-01 | 100.0% | 42.9% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.76 | 66.0 | 4.91e-01 | 98.8% | 40.0% |
| 3g5kA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.75 | 67.0 | 4.97e-01 | 93.8% | 45.9% |
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.72 | 63.0 | 4.94e-01 | 92.6% | 74.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999343 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 68.0 | 5.20e-01 | 93.8% | 39.4% |
| 2579249 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 64.0 | 5.03e-01 | 93.8% | 39.6% |
| 167197 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.76 | 66.0 | 4.81e-01 | 96.3% | 36.6% |
| 4113678 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.76 | 65.0 | 4.90e-01 | 97.5% | 40.8% |
| 3336542 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.75 | 67.0 | 5.86e-01 | 93.8% | 73.0% |
| 4454013 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.73 | 64.0 | 4.86e-01 | 98.8% | 42.2% |
| 4304576 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.73 | 66.0 | 4.89e-01 | 98.8% | 43.1% |
| 4165265 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.70 | 62.0 | 4.48e-01 | 93.8% | 38.7% |
D2
medium
residues 82-164
Domain cluster:
rep: MW015081.1__QPX48081.1__X__00116__D69-144
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01327.27 best | Pep_deformylase | 43.7 | 3.10e-11 | 100.0% | 48.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.89 | 81.0 | 6.37e-01 | 97.6% | 50.6% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.89 | 83.0 | 6.52e-01 | 100.0% | 52.6% |
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 80.0 | 6.13e-01 | 100.0% | 52.3% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 75.0 | 6.20e-01 | 96.4% | 56.9% |
| 6guuA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 34.0 | 4.00e-01 | 90.4% | 96.3% |
| 3thxA02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.53 | 36.0 | 2.94e-01 | 71.1% | 76.4% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 35.0 | 3.79e-01 | 81.9% | 83.8% |
| 2ar5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 38.0 | 3.43e-01 | 80.7% | 82.1% |
| 1iamA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 24.0 | 2.48e-01 | 75.9% | 42.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999343 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 83.0 | 6.41e-01 | 100.0% | 49.7% |
| 4220709 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 84.0 | 6.36e-01 | 100.0% | 49.4% |
| 4304576 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 81.0 | 5.97e-01 | 100.0% | 43.6% |
| 4215094 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 81.0 | 6.04e-01 | 100.0% | 45.9% |
| 5023445 | 289.1.1.2 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Zn_protease | 0.84 | 77.0 | 6.32e-01 | 97.6% | 71.4% |
| 4562403 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.52 | 36.0 | 3.78e-01 | 91.6% | 81.3% |