←Back to structures
CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00161
Bact-VirCG_2015-01t_scaffold_8_prodigal-single.1__X__X__00161
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-158
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20935.3 best | DUF6847 | 31.0 | 3.30e-07 | 91.8% | 97.2% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.78 | 71.0 | 7.22e-01 | 98.1% | 100.0% |
| 4fz4A00 | 1.20.140.130 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.70 | 36.0 | 3.67e-01 | 98.1% | 50.6% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 31.0 | 4.34e-01 | 93.0% | 89.2% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.65 | 40.0 | 4.17e-01 | 100.0% | 66.9% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.65 | 34.0 | 3.95e-01 | 99.4% | 68.6% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.60 | 34.0 | 3.67e-01 | 98.1% | 64.2% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 35.0 | 3.92e-01 | 93.7% | 74.2% |
| 3k29A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 36.0 | 3.66e-01 | 98.1% | 58.4% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.58 | 36.0 | 3.58e-01 | 94.9% | 56.7% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.56 | 37.0 | 4.43e-01 | 94.3% | 100.0% |
| 7d3uC01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 31.0 | 3.72e-01 | 94.3% | 79.4% |
| 7zo9A01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.53 | 46.0 | 3.64e-01 | 91.8% | 95.8% |
| 7wivA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.56e-01 | 91.8% | 99.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3789527 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.86 | 79.0 | 8.00e-01 | 95.6% | 100.0% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.81 | 72.0 | 7.41e-01 | 93.0% | 100.0% |
| 3272287 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.80 | 38.0 | 4.74e-01 | 94.3% | 72.0% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.80 | 40.0 | 5.69e-01 | 96.2% | 97.5% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.78 | 41.0 | 5.59e-01 | 94.9% | 95.3% |
| 3754034 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.78 | 34.0 | 4.72e-01 | 93.0% | 78.8% |
| 1269742 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.78 | 71.0 | 7.22e-01 | 98.1% | 100.0% |
| None | — | 0.65 | 34.0 | 3.63e-01 | 100.0% | 55.9% | |
| 3789506 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 39.0 | 4.31e-01 | 100.0% | 75.4% |
| 3595990 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 36.0 | 3.54e-01 | 100.0% | 53.1% |
| 4349607 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.60 | 41.0 | 4.86e-01 | 97.5% | 100.0% |
| 3746563 | 3755.3.1.123 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin | 0.57 | 41.0 | 4.27e-01 | 100.0% | 78.0% |
| 3921396 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.56 | 37.0 | 3.15e-01 | 93.0% | 40.4% |
| 3669260 | 192.2.1.35 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Hobbit | 0.56 | 27.0 | 3.58e-01 | 98.1% | 84.7% |
| 3990182 | 3922.1.1.226 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 | 0.54 | 36.0 | 4.11e-01 | 96.2% | 93.9% |
| 4581983 | 5086.1.1.13 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › T3SSipB | 0.54 | 40.0 | 4.25e-01 | 92.4% | 87.1% |
| 4300897 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.52 | 39.0 | 4.19e-01 | 94.3% | 94.6% |
| 4020727 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 36.0 | 4.05e-01 | 100.0% | 91.2% |