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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00242
Bact-VirCG_2015-01t_scaffold_8_prodigal-single.1__X__X__00242
Identity
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.80 | 54.0 | 4.77e-01 | 70.2% | 71.6% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.69 | 61.0 | 4.53e-01 | 98.2% | 59.0% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.62 | 42.0 | 3.53e-01 | 71.9% | 64.4% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 46.0 | 3.23e-01 | 80.7% | 26.8% |
| 4c2mA06 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.61 | 46.0 | 3.41e-01 | 96.5% | 29.3% |
| 1miwA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 46.0 | 4.44e-01 | 89.5% | 73.4% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.60 | 53.0 | 3.45e-01 | 100.0% | 86.6% |
| 2mf4A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.60 | 44.0 | 3.95e-01 | 100.0% | 54.9% |
| 1wp9B03 | 1.20.1320.20 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain | 0.59 | 47.0 | 3.62e-01 | 91.2% | 38.5% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 43.0 | 3.50e-01 | 78.9% | 45.6% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.59 | 41.0 | 2.95e-01 | 73.7% | 36.9% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 49.0 | 3.65e-01 | 100.0% | 77.2% |
| 3hz3A03 | 3.20.20.470 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase | 0.57 | 44.0 | 2.70e-01 | 91.2% | 13.0% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.56 | 45.0 | 3.28e-01 | 100.0% | 30.2% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 42.0 | 3.52e-01 | 86.0% | 64.3% |
| 3ig5A04 | 1.10.8.960 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 41.0 | 4.00e-01 | 93.0% | 75.8% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.55 | 46.0 | 4.46e-01 | 100.0% | 84.6% |
| 1tdzA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 46.0 | 3.63e-01 | 100.0% | 50.0% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 45.0 | 4.07e-01 | 100.0% | 75.0% |
| 3ukhA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.46e-01 | 87.7% | 43.3% |
| 3hgkE00 | 1.20.1280.110 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 37.0 | 3.51e-01 | 98.2% | 59.7% |
| 4azsA03 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 44.0 | 3.39e-01 | 100.0% | 86.6% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 41.0 | 2.48e-01 | 86.0% | 29.2% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 41.0 | 3.87e-01 | 100.0% | 73.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3562851 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.79 | 64.0 | 4.63e-01 | 86.0% | 64.8% |
| 3333780 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.78 | 64.0 | 4.64e-01 | 86.0% | 67.1% |
| 3167163 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.77 | 52.0 | 4.36e-01 | 70.2% | 61.1% |
| 4876668 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.76 | 62.0 | 4.67e-01 | 86.0% | 55.6% |
| 4169333 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.75 | 63.0 | 4.82e-01 | 91.2% | 53.6% |
| 4027630 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.72 | 61.0 | 4.74e-01 | 93.0% | 64.2% |
| 2970332 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.72 | 60.0 | 4.48e-01 | 93.0% | 61.5% |
| 4237263 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.71 | 59.0 | 4.64e-01 | 91.2% | 64.2% |
| 3001792 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.71 | 59.0 | 4.67e-01 | 93.0% | 65.3% |
| 4995740 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.71 | 61.0 | 4.73e-01 | 96.5% | 68.0% |
| 3229408 | 102.1.1.16 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 | 0.70 | 41.0 | 3.48e-01 | 70.2% | 35.6% |
| 4038795 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.70 | 48.0 | 3.85e-01 | 89.5% | 37.3% |
| 3372712 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.69 | 46.0 | 3.70e-01 | 70.2% | 71.8% |
| 4962468 | 101.1.2.925 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7344 | 0.64 | 49.0 | 4.06e-01 | 84.2% | 61.9% |
| 2171778 | 129.1.1.13 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Staph_opine_DH | 0.62 | 45.0 | 3.05e-01 | 77.2% | 24.8% |
| 4074758 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.62 | 55.0 | 3.52e-01 | 100.0% | 80.0% |
| 4964800 | 101.1.2.925 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7344 | 0.62 | 48.0 | 3.95e-01 | 86.0% | 62.9% |
| 3461151 | 364.1.1.1 ↗ | few secondary structure elements › TAZ domain › TAZ domain › TAZ domain › zf-TAZ | 0.60 | 45.0 | 4.00e-01 | 82.5% | 94.1% |
| 4963901 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.60 | 43.0 | 2.91e-01 | 77.2% | 44.0% |
| 3591906 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.60 | 42.0 | 3.24e-01 | 71.9% | 37.6% |
| 4051373 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 44.0 | 2.81e-01 | 82.5% | 38.1% |
| 3734131 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.59 | 51.0 | 4.92e-01 | 100.0% | 89.2% |
| 3502241 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 42.0 | 4.65e-01 | 80.7% | 95.6% |
| 3477964 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.59 | 45.0 | 3.51e-01 | 87.7% | 51.1% |
| 3991955 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.57 | 47.0 | 3.31e-01 | 98.2% | 51.7% |
| 3742615 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.57 | 47.0 | 4.62e-01 | 100.0% | 92.3% |
| 1247851 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.55 | 38.0 | 3.40e-01 | 71.9% | 79.5% |
| 4983262 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.54 | 40.0 | 3.54e-01 | 89.5% | 51.6% |
| 4547453 | 650.1.1.2 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 | 0.52 | 40.0 | 3.68e-01 | 89.5% | 62.7% |