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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00249

Bact-Vir

CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

92.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-78
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 43.0 4.12e-01 77.8% 56.0%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 3.75e-01 98.4% 53.7%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.63 49.0 3.77e-01 85.7% 70.2%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.63 55.0 4.25e-01 100.0% 81.5%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.31e-01 100.0% 67.1%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.61 53.0 4.60e-01 100.0% 63.0%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.61 46.0 4.54e-01 100.0% 76.8%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.60 52.0 3.77e-01 100.0% 41.5%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.60 51.0 4.26e-01 100.0% 79.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.53e-01 100.0% 87.5%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 51.0 4.05e-01 100.0% 95.6%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 42.0 4.17e-01 76.2% 89.4%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 4.01e-01 93.7% 71.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.16e-01 100.0% 84.5%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.58 50.0 3.73e-01 100.0% 45.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.57 41.0 3.90e-01 76.2% 85.3%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.57 50.0 3.95e-01 98.4% 94.7%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.57 48.0 3.46e-01 100.0% 48.1%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.00e-01 100.0% 84.6%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.66e-01 100.0% 67.5%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 42.0 3.32e-01 82.5% 38.6%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.39e-01 95.2% 80.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.18e-01 100.0% 80.0%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 47.0 3.84e-01 100.0% 97.0%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.56 48.0 3.28e-01 100.0% 26.0%
1wvhA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.84e-01 100.0% 85.6%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.10e-01 100.0% 76.6%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.89e-01 100.0% 60.5%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.56 47.0 3.81e-01 100.0% 62.4%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.55 45.0 3.63e-01 100.0% 67.3%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.74e-01 100.0% 74.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 42.0 3.59e-01 87.3% 78.8%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.55 41.0 3.06e-01 100.0% 29.3%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.17e-01 98.4% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.44e-01 100.0% 50.0%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.51e-01 100.0% 62.5%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.28e-01 100.0% 78.7%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.53 37.0 2.98e-01 74.6% 92.1%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.84e-01 100.0% 79.6%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.93e-01 100.0% 79.0%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.71e-01 95.2% 91.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.49e-01 100.0% 98.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 2.97e-01 88.9% 66.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.52 44.0 3.84e-01 98.4% 89.4%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.52 43.0 3.69e-01 98.4% 70.5%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 45.0 4.14e-01 100.0% 75.6%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.16e-01 87.3% 86.0%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 40.0 3.64e-01 87.3% 75.0%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 3.05e-01 76.2% 86.6%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 2.98e-01 85.7% 67.3%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.51 37.0 3.54e-01 81.0% 84.4%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.51 41.0 3.50e-01 100.0% 54.4%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.23e-01 88.9% 82.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.70 54.0 5.40e-01 98.4% 81.5%
3578128 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 45.0 4.72e-01 74.6% 81.8%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 50.0 4.66e-01 100.0% 67.5%
3581143 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.62 45.0 4.46e-01 100.0% 73.8%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.62 53.0 4.30e-01 100.0% 67.7%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.61 54.0 5.36e-01 100.0% 98.5%
3933782 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.61 44.0 4.02e-01 98.4% 56.5%
3998029 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.36e-01 100.0% 71.4%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 49.0 4.76e-01 100.0% 82.9%
3224710 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.59 51.0 4.90e-01 100.0% 92.0%
3861569 220.1.1.56 beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.59 52.0 4.30e-01 100.0% 70.4%
3057477 220.1.1.146 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.59 50.0 4.56e-01 100.0% 81.3%
3388697 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 39.0 3.68e-01 100.0% 53.8%
3177726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 49.0 3.69e-01 100.0% 50.3%
3739062 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 45.0 2.79e-01 100.0% 12.9%
3878495 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.58 49.0 3.50e-01 100.0% 67.4%
3178261 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.08e-01 100.0% 66.4%
3514467 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 48.0 3.97e-01 100.0% 61.5%
3787118 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 45.0 2.88e-01 100.0% 15.9%
3247824 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.24e-01 100.0% 73.3%
3702239 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 3.89e-01 100.0% 77.0%
3598462 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.95e-01 98.4% 68.0%
3900957 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 3.93e-01 100.0% 60.0%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 42.0 4.50e-01 100.0% 90.9%
3817230 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.57 48.0 3.54e-01 100.0% 34.6%
3516854 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.10e-01 100.0% 73.0%
4946849 1.1.5.15 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.57 41.0 3.08e-01 79.4% 71.2%
3432858 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.56 47.0 3.74e-01 100.0% 97.2%
3511551 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.31e-01 96.8% 86.7%
3484082 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 47.0 3.52e-01 100.0% 41.1%
3373176 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.56 46.0 3.78e-01 100.0% 94.2%
3235201 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.97e-01 100.0% 72.8%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.56 47.0 4.15e-01 100.0% 71.0%
4028425 220.1.1.286 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.56 47.0 3.84e-01 100.0% 68.5%
3744629 220.1.1.34 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.56 48.0 3.91e-01 100.0% 81.6%
3592221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 3.94e-01 100.0% 65.3%
3801890 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 43.0 3.09e-01 87.3% 85.5%
3264990 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 46.0 3.95e-01 100.0% 68.7%
3881121 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 40.0 3.51e-01 100.0% 50.0%
3416133 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 46.0 4.36e-01 100.0% 77.3%
3393055 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 3.87e-01 100.0% 77.5%
3765367 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 3.60e-01 100.0% 58.0%
4929590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.80e-01 100.0% 62.4%
3398310 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 3.85e-01 100.0% 80.9%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.17e-01 100.0% 76.0%
3471615 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.54 46.0 3.86e-01 100.0% 78.3%
3592358 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.86e-01 100.0% 81.7%
3389062 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.92e-01 100.0% 79.0%
3278636 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 41.0 3.19e-01 87.3% 89.7%
3291237 1.1.5.15 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.53 39.0 3.24e-01 79.4% 81.7%
3926852 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.58e-01 100.0% 77.9%
3797569 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 38.0 3.97e-01 87.3% 92.7%
3199835 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.39e-01 100.0% 86.7%
4927529 1.1.5.15 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.53 38.0 3.31e-01 79.4% 98.1%
3280574 1.1.5.15 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.52 41.0 3.29e-01 90.5% 77.9%
3337318 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.52e-01 100.0% 75.0%
3466098 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.52 42.0 2.81e-01 98.4% 83.4%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.52 43.0 3.74e-01 100.0% 74.5%
3890418 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.52 43.0 3.76e-01 100.0% 84.8%
3436556 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.52 42.0 4.08e-01 100.0% 90.7%
3598271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 40.0 2.99e-01 100.0% 32.4%
5065441 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.91e-01 85.7% 94.3%
4984815 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 40.0 3.00e-01 100.0% 32.9%