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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00287

Bact-Vir

CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00287

Identity

Kingdom:
phage

Quality

93.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22515.3 best DUF6996 76.0 2.50e-21 89.9% 97.2%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pjpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 5.46e-01 92.4% 95.0%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.73e-01 94.9% 94.5%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.69 42.0 4.36e-01 73.4% 64.5%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.10e-01 96.2% 76.2%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.66 55.0 5.57e-01 92.4% 96.2%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.78e-01 97.5% 75.3%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.65 56.0 5.42e-01 96.2% 92.0%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.64 54.0 4.99e-01 98.7% 72.3%
1rq8A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.64 46.0 4.39e-01 92.4% 63.5%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 54.0 3.83e-01 96.2% 95.6%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.62 39.0 4.04e-01 72.2% 68.1%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.40e-01 96.2% 70.8%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.61 44.0 4.49e-01 91.1% 77.9%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.25e-01 94.9% 66.7%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 5.00e-01 97.5% 93.3%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.76e-01 98.7% 81.6%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.85e-01 94.9% 98.5%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.38e-01 94.9% 34.9%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.60 51.0 5.23e-01 96.2% 100.0%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.59 44.0 4.45e-01 91.1% 81.0%
2cxaA01 3.30.70.3550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain 0.58 38.0 4.18e-01 92.4% 88.3%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.57 44.0 4.63e-01 96.2% 97.1%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.16e-01 96.2% 70.2%
7pb9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.79e-01 91.1% 100.0%
3dplC02 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.57 50.0 3.92e-01 100.0% 57.2%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 43.0 4.58e-01 94.9% 98.5%
2q4aA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.57 50.0 3.32e-01 98.7% 90.0%
3l7yA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 47.0 4.25e-01 91.1% 90.8%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.84e-01 100.0% 98.7%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 39.0 3.34e-01 70.9% 49.2%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.11e-01 96.2% 67.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.10e-01 94.9% 70.7%
2hf2B02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 45.0 4.09e-01 87.3% 91.6%
4dcmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 3.28e-01 92.4% 36.2%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.05e-01 97.5% 55.0%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.73e-01 96.2% 95.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.29e-01 96.2% 81.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.11e-01 98.7% 63.3%
1vl5C00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.23e-01 88.6% 63.8%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 34.0 3.80e-01 87.3% 86.2%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.54 43.0 4.00e-01 87.3% 87.3%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 44.0 4.43e-01 94.9% 92.3%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.99e-01 96.2% 74.7%
3dnpA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 44.0 3.88e-01 88.6% 92.0%
2d9iA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 44.0 4.19e-01 94.9% 76.0%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.53 45.0 4.00e-01 96.2% 75.0%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 44.0 3.81e-01 91.1% 94.3%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 44.0 3.97e-01 89.9% 90.6%
4dw8A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 44.0 4.03e-01 91.1% 92.5%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.53 40.0 3.86e-01 94.9% 70.8%
6g80B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 40.0 2.96e-01 93.7% 29.4%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 37.0 3.30e-01 88.6% 50.9%
5yhgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 36.0 2.53e-01 86.1% 20.6%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.95e-01 94.9% 80.0%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.82e-01 92.4% 78.6%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 38.0 3.58e-01 81.0% 92.0%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031997 101.1.2.700 alpha arrays › HTH › HTH › winged helix domain › DUF7662 0.72 60.0 6.04e-01 92.4% 100.0%
3583504 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 46.0 5.47e-01 87.3% 98.1%
4563576 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.69 60.0 5.65e-01 94.9% 86.3%
4046651 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 40.0 4.23e-01 70.9% 64.3%
5082316 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.69 58.0 5.53e-01 93.7% 88.4%
5000814 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 5.67e-01 93.7% 100.0%
3588338 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.68 60.0 4.71e-01 98.7% 68.2%
4522308 101.1.2.654 alpha arrays › HTH › HTH › winged helix domain › RPA 0.68 58.0 5.86e-01 96.2% 93.8%
4586240 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.68 42.0 4.10e-01 72.2% 56.5%
5069569 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.68 53.0 5.30e-01 97.5% 82.5%
3821093 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.68 49.0 4.67e-01 92.4% 64.2%
3377114 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.67 50.0 4.72e-01 93.7% 65.3%
3539518 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.31e-01 97.5% 75.0%
4971048 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.66 52.0 5.07e-01 97.5% 77.6%
3648901 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.66 49.0 4.62e-01 93.7% 65.3%
4978401 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 48.0 4.50e-01 96.2% 63.2%
3509319 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.80e-01 94.9% 86.2%
3188603 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.66 55.0 3.81e-01 97.5% 27.2%
5051594 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.66 50.0 4.87e-01 96.2% 72.2%
3987881 101.1.2.76 alpha arrays › HTH › HTH › winged helix domain › CtsR 0.66 52.0 5.29e-01 96.2% 90.7%
5078708 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.66 50.0 5.18e-01 96.2% 86.7%
5040640 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.65 50.0 5.04e-01 97.5% 82.5%
4255377 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 51.0 5.22e-01 96.2% 90.7%
3567088 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.52e-01 97.5% 97.3%
5001696 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 50.0 4.86e-01 97.5% 74.4%
3587594 101.1.2.93 alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.64 51.0 5.02e-01 96.2% 81.2%
None 0.64 51.0 5.27e-01 97.5% 92.0%
5062558 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 49.0 5.06e-01 97.5% 88.0%
4028677 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 4.85e-01 100.0% 70.5%
3539573 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.04e-01 97.5% 40.0%
4991879 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.96e-01 98.7% 77.1%
4023624 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.61 53.0 4.70e-01 96.2% 78.3%
3938497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.84e-01 97.5% 74.3%
5028452 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.61 46.0 4.78e-01 92.4% 85.3%
5056274 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.61 42.0 3.30e-01 89.9% 32.8%
3978283 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.61 46.0 4.69e-01 93.7% 86.7%
4928989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.52e-01 94.9% 73.1%
4319036 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 43.0 3.47e-01 91.1% 36.4%
3165321 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.60 48.0 4.64e-01 94.9% 76.7%
4098142 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.60 47.0 4.77e-01 97.5% 86.3%
3587729 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.72e-01 96.2% 82.4%
5038972 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.64e-01 94.9% 85.0%
3930245 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.59 48.0 4.32e-01 96.2% 64.5%
5052340 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.92e-01 93.7% 100.0%
5001174 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.57e-01 93.7% 83.7%
4988081 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.81e-01 94.9% 98.6%
3729359 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.82e-01 96.2% 95.6%
3680635 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.58 47.0 4.38e-01 94.9% 68.6%
3721862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.13e-01 94.9% 66.0%
4982742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.57e-01 94.9% 98.5%
4976723 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.68e-01 94.9% 97.1%
2733 101.1.2.117 alpha arrays › HTH › HTH › winged helix domain › F-112 0.57 44.0 4.63e-01 96.2% 97.1%
3685473 109.4.1.295 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.57 44.0 2.78e-01 93.7% 14.3%
3478591 101.1.2.493 alpha arrays › HTH › HTH › winged helix domain › PF26557 0.57 50.0 4.71e-01 100.0% 81.1%
4997662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.87e-01 94.9% 58.2%
3505845 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.57 46.0 4.34e-01 94.9% 73.0%
3241184 101.1.2.493 alpha arrays › HTH › HTH › winged helix domain › PF26557 0.57 49.0 4.44e-01 98.7% 74.5%
3239585 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.56 44.0 4.63e-01 97.5% 100.0%
4930777 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.72e-01 98.7% 86.7%
5023129 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.36e-01 94.9% 85.0%
3621658 3110.1.1.4 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › Dpy19 0.55 44.0 3.64e-01 89.9% 58.4%
3380667 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.55 43.0 4.11e-01 94.9% 71.6%
3995560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.47e-01 94.9% 85.6%
4625029 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.55 44.0 4.05e-01 97.5% 67.6%
4989402 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.53 44.0 3.16e-01 92.4% 55.1%
5038626 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.53 46.0 3.79e-01 98.7% 74.5%
3959605 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 36.0 3.15e-01 72.2% 48.8%
4936304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 4.09e-01 96.2% 84.7%
3959992 304.121.1.0 a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like 0.52 31.0 3.35e-01 83.5% 69.2%
3818462 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.52 44.0 4.31e-01 98.7% 88.9%
4943641 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.97e-01 94.9% 88.0%
3647916 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.52 44.0 3.61e-01 94.9% 70.7%
None 0.52 45.0 3.90e-01 100.0% 62.8%
5026582 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.16e-01 100.0% 84.2%
3413690 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.51 42.0 4.16e-01 96.2% 87.1%
3279756 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.51 43.0 3.63e-01 96.2% 77.9%
5061659 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.99e-01 97.5% 92.0%
4432407 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.50 40.0 3.91e-01 94.9% 80.0%
2137469 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.50 39.0 3.27e-01 93.7% 47.6%
D2 high residues 83-248
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22518.3 best DUF6997 86.5 3.30e-24 97.6% 70.9%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.74 48.0 5.65e-01 82.5% 90.8%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.74 46.0 5.74e-01 73.5% 100.0%
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 46.0 5.37e-01 78.3% 100.0%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.66 45.0 4.23e-01 75.9% 58.5%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 46.0 5.28e-01 81.9% 96.0%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.56 36.0 4.13e-01 81.3% 87.5%
1i74A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.56 35.0 4.09e-01 81.3% 87.4%
2p14A00 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.55 47.0 4.54e-01 91.6% 100.0%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.79e-01 100.0% 94.3%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 23.0 2.94e-01 83.7% 64.2%
3e38B01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 37.0 3.23e-01 70.5% 49.4%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 28.0 3.35e-01 84.9% 75.9%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 3.84e-01 82.5% 75.4%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.51 25.0 3.02e-01 81.9% 69.2%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 33.0 3.57e-01 83.1% 77.0%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 30.0 3.66e-01 98.8% 91.5%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.50 44.0 4.50e-01 95.8% 97.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5005960 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.79 51.0 4.97e-01 75.9% 59.2%
4930402 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 53.0 5.23e-01 81.9% 67.4%
5042023 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.75 52.0 4.93e-01 76.5% 60.5%
4947545 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.75 50.0 4.82e-01 75.9% 59.5%
4929251 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.75 50.0 4.78e-01 76.5% 58.9%
3605286 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.74 43.0 5.44e-01 73.5% 96.0%
5010105 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.73 50.0 5.73e-01 81.9% 92.0%
4149106 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.73 50.0 5.49e-01 81.3% 85.2%
5011600 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.73 47.0 5.68e-01 83.1% 98.2%
5080245 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.72 51.0 4.91e-01 76.5% 63.2%
4960251 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.72 50.0 5.54e-01 86.7% 88.0%
4223379 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.71 48.0 5.74e-01 76.5% 99.1%
4208554 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.71 49.0 5.74e-01 72.3% 100.0%
4402765 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 48.0 5.38e-01 82.5% 87.6%
3386658 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 51.0 5.05e-01 79.5% 72.6%
4991917 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.69 51.0 5.51e-01 92.8% 90.0%
4950447 2008.1.1.87 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.68 52.0 5.43e-01 83.1% 85.1%
5057784 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 39.0 5.08e-01 70.5% 100.0%
4489809 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.68 55.0 4.51e-01 84.9% 72.4%
4933915 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.67 49.0 5.01e-01 83.7% 76.9%
5076295 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.67 49.0 5.36e-01 81.9% 91.9%
5079137 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.66 50.0 5.41e-01 83.7% 92.1%
4676615 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.65 57.0 4.77e-01 92.8% 93.1%
5051988 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 44.0 5.08e-01 86.7% 94.2%
5011167 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 55.0 5.12e-01 90.4% 85.7%
5041156 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.64 53.0 5.36e-01 92.2% 86.7%
4961001 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.64 51.0 5.14e-01 90.4% 81.8%
4426454 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 52.0 3.09e-01 89.2% 16.9%
2721398 2008.1.1.34 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.61 43.0 4.86e-01 83.1% 92.2%
3624597 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.61 26.0 3.30e-01 74.7% 63.0%
3287898 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 52.0 4.85e-01 92.2% 92.5%
3909234 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 29.0 3.35e-01 89.8% 62.6%
4150493 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 53.0 4.83e-01 100.0% 74.4%
3643041 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.58 35.0 3.97e-01 71.7% 76.2%
3102571 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 44.0 4.73e-01 83.1% 90.9%
5010735 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 42.0 4.44e-01 83.1% 86.9%
5080335 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 47.0 3.86e-01 89.2% 92.3%
164523 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.56 36.0 4.10e-01 81.3% 87.6%
3697816 2008.1.1.99 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.55 48.0 4.63e-01 93.4% 84.2%
4997269 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 43.0 4.33e-01 83.1% 82.4%
429988 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.54 23.0 2.95e-01 83.1% 64.5%
3837554 4126.1.1.1 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.53 44.0 4.04e-01 89.2% 94.0%
4486866 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.52 44.0 4.49e-01 95.8% 93.3%
143789 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 38.0 3.83e-01 82.5% 75.0%
3924900 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 45.0 4.38e-01 95.2% 95.0%
3259164 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 45.0 4.36e-01 95.8% 91.9%
3506091 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 44.0 4.33e-01 95.8% 91.9%
4607024 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 44.0 4.37e-01 95.8% 93.9%
3635696 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.50 44.0 4.26e-01 95.2% 94.2%
3496629 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.50 44.0 4.38e-01 95.2% 95.3%
3222276 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.50 44.0 4.38e-01 95.8% 94.7%