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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00289

Bact-Vir

CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00289

Identity

Kingdom:
phage

Quality

72.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-75
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 59.0 6.23e-01 81.4% 85.2%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 54.0 4.21e-01 79.7% 40.7%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.72 47.0 4.30e-01 78.0% 51.3%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 60.0 5.13e-01 100.0% 98.9%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 46.0 4.56e-01 74.6% 70.5%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 54.0 4.73e-01 91.5% 96.6%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.65 53.0 4.79e-01 89.8% 70.4%
4nu0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 51.0 3.48e-01 88.1% 63.2%
3o70A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 41.0 4.26e-01 72.9% 70.9%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 45.0 4.41e-01 78.0% 72.3%
2miqA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 39.0 3.37e-01 78.0% 46.8%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.54 40.0 2.86e-01 79.7% 81.1%
4y97D00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.52 40.0 2.95e-01 88.1% 57.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1002459 378.1.1.13 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.85 58.0 6.23e-01 71.2% 84.6%
3561303 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.84 60.0 4.24e-01 79.7% 26.7%
3199914 377.1.1.22 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 0.83 54.0 6.60e-01 71.2% 100.0%
3397474 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.80 52.0 6.26e-01 74.6% 100.0%
5061253 376.1.3.97 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.79 57.0 5.12e-01 86.4% 56.2%
3924159 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 56.0 4.83e-01 81.4% 50.0%
3733728 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.77 50.0 4.48e-01 71.2% 48.8%
3928956 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 47.0 4.85e-01 72.9% 67.3%
3259718 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 61.0 5.02e-01 93.2% 80.0%
4957868 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 42.0 5.25e-01 71.2% 100.0%
3498231 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 62.0 5.40e-01 93.2% 98.8%
3438467 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 62.0 5.33e-01 94.9% 100.0%
3745376 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.71 52.0 4.82e-01 78.0% 65.3%
3727710 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 57.0 5.89e-01 86.4% 96.4%
3211002 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 50.0 4.78e-01 76.3% 88.6%
3683169 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.69 63.0 5.24e-01 100.0% 91.0%
3717537 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 44.0 4.59e-01 74.6% 70.9%
3301048 376.1.1.19 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.69 45.0 5.20e-01 71.2% 100.0%
2428742 3961.1.1.0 0.68 49.0 3.80e-01 81.4% 35.4%
3326051 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.68 62.0 5.21e-01 100.0% 92.6%
3717337 376.1.1.165 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE 0.68 45.0 4.23e-01 89.8% 54.7%
3702126 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 56.0 4.99e-01 91.5% 97.6%
4056277 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.67 43.0 4.22e-01 72.9% 60.0%
3231284 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 47.0 4.56e-01 72.9% 93.8%
3430765 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 61.0 5.07e-01 100.0% 90.0%
3225705 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 45.0 5.09e-01 74.6% 93.3%
3401103 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 57.0 4.75e-01 96.6% 56.0%
3636589 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 57.0 4.96e-01 98.3% 93.3%
4466003 376.1.3.44 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.65 43.0 4.16e-01 74.6% 61.5%
3528398 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 45.0 3.17e-01 74.6% 45.2%
3732738 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 44.0 4.41e-01 83.1% 75.0%
3700533 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 47.0 3.08e-01 84.7% 24.1%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 43.0 4.57e-01 81.4% 88.0%
5049855 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 40.0 4.02e-01 74.6% 68.3%
3592209 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 43.0 3.61e-01 100.0% 45.5%
3371570 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 42.0 3.24e-01 100.0% 32.7%
3300469 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.56 37.0 3.98e-01 74.6% 82.0%
3212393 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 40.0 3.30e-01 76.3% 40.9%
3411509 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 38.0 4.23e-01 71.2% 93.3%
5036295 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.56 38.0 3.96e-01 74.6% 80.0%
3718268 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.55 33.0 3.06e-01 98.3% 42.5%
3913312 377.1.1.50 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.55 39.0 4.30e-01 74.6% 95.6%
4929746 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 38.0 2.93e-01 78.0% 32.2%
4946657 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.53 43.0 4.25e-01 89.8% 81.5%
2878975 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.53 36.0 3.38e-01 72.9% 55.3%
3733350 2004.1.1.686 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, DEAD, Helicase_C 0.52 41.0 2.38e-01 88.1% 38.7%
D2 high residues 87-156
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.58 42.0 3.28e-01 78.6% 52.4%
2pptA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 30.0 3.71e-01 91.4% 89.2%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.57 42.0 3.78e-01 81.4% 84.9%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 39.0 4.28e-01 88.6% 89.5%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.56 39.0 4.29e-01 92.9% 94.5%
2qntA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 3.45e-01 77.1% 96.6%
7bgsA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 47.0 3.94e-01 92.9% 95.0%
3uh9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 39.0 3.31e-01 77.1% 82.0%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.79e-01 84.3% 43.4%
2bdvA00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.55 42.0 3.05e-01 84.3% 83.6%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.33e-01 70.0% 60.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 37.0 2.90e-01 71.4% 60.8%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.55 28.0 3.55e-01 91.4% 91.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 37.0 4.04e-01 94.3% 92.9%
3bqxA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 45.0 3.68e-01 98.6% 93.5%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.53 40.0 3.56e-01 87.1% 84.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 28.0 3.44e-01 70.0% 89.7%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.51 42.0 2.73e-01 94.3% 58.9%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 3.16e-01 97.1% 76.7%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 37.0 3.94e-01 87.1% 93.2%
4ow8A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 39.0 3.00e-01 90.0% 83.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269220 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.66 35.0 2.41e-01 75.7% 14.9%
5065789 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 31.0 3.76e-01 92.9% 82.5%
3283015 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 42.0 3.57e-01 77.1% 98.3%
4864637 7008.1.1.1 alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa 0.57 38.0 3.18e-01 70.0% 74.1%
3493703 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.56 31.0 3.61e-01 72.9% 80.0%
3250581 3409.1.1.1 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 0.56 41.0 2.72e-01 78.6% 28.1%
5016027 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.59e-01 72.9% 76.7%
3204103 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 31.0 3.27e-01 75.7% 58.3%
3407848 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 37.0 3.43e-01 70.0% 60.0%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 38.0 3.53e-01 71.4% 64.4%
3312712 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 33.0 3.73e-01 81.4% 84.0%
3296731 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.55 33.0 3.82e-01 81.4% 93.3%
3919221 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.54 33.0 3.25e-01 90.0% 53.3%
3455086 650.1.1.7 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Zn_ribbon_20 0.54 30.0 3.45e-01 92.9% 80.0%
5002449 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.05e-01 72.9% 94.5%
3881111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 36.0 3.36e-01 70.0% 64.4%
3365759 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 31.0 3.59e-01 77.1% 95.0%
3747736 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.53 38.0 3.69e-01 100.0% 67.5%
1291133 220.6.1.1 beta barrels › PH domain-like › Uncharacterized protein PA3793 › Uncharacterized protein PA3793 › DUF5629 0.53 40.0 3.56e-01 87.1% 84.1%
3620992 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.53 34.0 3.77e-01 82.9% 90.0%
3538753 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.52 37.0 3.87e-01 80.0% 87.7%
3861324 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.52 30.0 3.36e-01 75.7% 78.0%
3612107 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.50 29.0 3.09e-01 91.4% 63.3%
D3 high residues 180-250
PDB