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CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00347

Bact-Vir

CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00347

Identity

Kingdom:
phage

Quality

88.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-76_111-183
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.71 60.0 5.78e-01 100.0% 79.5%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 62.0 5.84e-01 100.0% 80.2%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 35.0 4.30e-01 94.2% 75.0%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 60.0 6.07e-01 100.0% 92.0%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 34.0 4.15e-01 93.4% 74.1%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.68 60.0 5.68e-01 100.0% 81.2%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 58.0 5.69e-01 100.0% 87.9%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 44.0 4.31e-01 100.0% 62.6%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.64 30.0 3.63e-01 71.5% 66.3%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.63 55.0 5.41e-01 100.0% 87.1%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 34.0 4.34e-01 88.3% 91.0%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.63 31.0 3.37e-01 89.8% 53.4%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 4.26e-01 91.2% 94.5%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.62 31.0 4.20e-01 71.5% 94.1%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 34.0 3.92e-01 94.2% 71.8%
3g88A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 36.0 2.98e-01 100.0% 32.6%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 32.0 4.03e-01 93.4% 85.0%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.61 35.0 4.02e-01 92.7% 74.8%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 29.0 3.42e-01 70.1% 62.9%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 32.0 3.78e-01 86.9% 73.7%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.59 29.0 4.07e-01 70.8% 100.0%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 32.0 3.70e-01 86.1% 72.2%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 33.0 3.11e-01 97.1% 44.4%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 4.60e-01 100.0% 79.6%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 35.0 3.67e-01 89.8% 64.3%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.47e-01 70.8% 68.3%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.56 34.0 3.74e-01 88.3% 74.1%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.56 46.0 4.65e-01 97.8% 87.5%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.56 39.0 4.20e-01 99.3% 85.0%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.56 29.0 3.86e-01 70.1% 100.0%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 30.0 3.59e-01 87.6% 80.7%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 31.0 3.06e-01 86.9% 51.4%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.48e-01 84.7% 72.3%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 4.27e-01 94.2% 100.0%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.53 30.0 3.60e-01 70.8% 80.9%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 30.0 3.40e-01 88.3% 71.8%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.53 28.0 3.48e-01 70.1% 86.3%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.98e-01 94.2% 85.2%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.51 44.0 4.44e-01 97.1% 90.8%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 31.0 3.76e-01 97.1% 95.3%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.96e-01 94.2% 95.0%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 30.0 2.99e-01 94.2% 54.5%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 43.0 3.42e-01 94.2% 83.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.83 65.0 5.10e-01 99.3% 41.5%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 69.0 7.14e-01 99.3% 94.6%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.81 71.0 7.00e-01 100.0% 88.3%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.80 68.0 6.83e-01 100.0% 87.9%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 68.0 6.99e-01 100.0% 94.6%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.79 62.0 6.39e-01 100.0% 88.2%
5004308 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 75.0 7.13e-01 100.0% 91.0%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.78 69.0 6.84e-01 100.0% 90.8%
3581358 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 73.0 6.96e-01 100.0% 88.4%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.77 71.0 6.93e-01 100.0% 89.9%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.77 69.0 6.35e-01 100.0% 75.0%
2101663 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.77 71.0 6.71e-01 98.5% 86.5%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.77 72.0 6.94e-01 100.0% 91.5%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 57.0 6.38e-01 100.0% 95.5%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.76 64.0 6.62e-01 100.0% 94.6%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.75 65.0 6.03e-01 100.0% 74.9%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 71.0 6.66e-01 99.3% 93.1%
4514734 1.1.13.42 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.75 55.0 6.10e-01 98.5% 95.5%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 70.0 6.60e-01 100.0% 96.9%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.72 65.0 6.38e-01 100.0% 91.0%
4878666 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.71 59.0 5.98e-01 100.0% 87.0%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 66.0 6.02e-01 100.0% 82.2%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.71 62.0 5.85e-01 100.0% 80.0%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.71 61.0 5.88e-01 100.0% 81.9%
4954561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 65.0 6.54e-01 99.3% 98.5%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.71 54.0 5.87e-01 97.8% 96.5%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.70 61.0 5.84e-01 100.0% 80.6%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.70 65.0 6.20e-01 100.0% 88.7%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 60.0 6.03e-01 99.3% 91.2%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 62.0 5.93e-01 100.0% 83.1%
3408311 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 36.0 4.18e-01 93.4% 69.0%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.69 62.0 6.35e-01 97.1% 98.5%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.69 57.0 5.94e-01 98.5% 96.8%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.68 59.0 5.64e-01 100.0% 80.8%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.68 59.0 6.14e-01 97.1% 100.0%
4947204 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 52.0 5.55e-01 99.3% 91.7%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.68 60.0 5.68e-01 100.0% 81.2%
3965192 1.1.13.67 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.67 53.0 5.70e-01 96.4% 99.1%
4032562 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.66 57.0 5.84e-01 97.1% 96.9%
1124583 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.66 58.0 5.69e-01 100.0% 87.9%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.65 58.0 5.60e-01 100.0% 85.2%
3570963 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.65 34.0 3.76e-01 73.7% 62.7%
3111928 3114.1.1.3 beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › Muc_B2 0.64 30.0 3.43e-01 90.5% 57.4%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.64 57.0 5.80e-01 97.1% 100.0%
3964568 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.62 28.0 3.45e-01 89.1% 65.9%
142721 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.62 30.0 4.06e-01 70.8% 88.7%
5001401 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.62 30.0 3.71e-01 73.0% 72.9%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 57.0 5.23e-01 100.0% 80.0%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.60 56.0 5.13e-01 100.0% 80.0%
4927424 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 4.03e-01 95.6% 67.4%
4953386 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.58 46.0 4.64e-01 100.0% 83.6%
5055700 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.58 30.0 4.00e-01 71.5% 95.7%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.56 46.0 4.67e-01 97.8% 88.8%
3200130 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.54 35.0 3.55e-01 73.0% 65.2%
4409111 11.1.1.66 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MdoG 0.51 36.0 4.16e-01 94.9% 100.0%
3327977 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.51 31.0 3.18e-01 73.0% 63.1%
D2 high residues 186-294
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.67 44.0 4.48e-01 100.0% 66.4%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 49.0 4.79e-01 97.2% 68.9%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.64 42.0 4.35e-01 100.0% 69.5%
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 46.0 4.91e-01 100.0% 86.5%
3kd4A01 2.60.40.3140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 4.10e-01 100.0% 46.6%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.61 48.0 5.13e-01 90.8% 97.9%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.56 50.0 4.54e-01 100.0% 88.6%
3bnwB00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 47.0 4.17e-01 100.0% 63.7%
5dawA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 42.0 3.16e-01 83.5% 75.0%
7fcbC01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 43.0 3.30e-01 89.0% 82.1%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.52 45.0 3.86e-01 100.0% 74.2%
7vbqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 43.0 3.30e-01 90.8% 86.8%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.52 46.0 4.58e-01 99.1% 97.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036977 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.73 48.0 4.06e-01 100.0% 40.6%
3616680 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.71 51.0 3.96e-01 100.0% 36.0%
3408808 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.67 50.0 3.97e-01 100.0% 38.6%
3860289 11.1.1.297 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.65 53.0 4.72e-01 100.0% 61.9%
3267246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 45.0 4.77e-01 97.2% 82.1%
3973332 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 41.0 4.81e-01 95.4% 98.7%
4935216 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 55.0 5.11e-01 100.0% 82.1%
3918860 11.1.1.16 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_N 0.61 55.0 4.99e-01 100.0% 84.1%
5007278 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 44.0 4.17e-01 100.0% 66.2%
3177363 11.1.5.134 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29914 0.57 44.0 4.02e-01 99.1% 60.7%
3886296 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 43.0 4.32e-01 97.2% 80.9%
3913606 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 4.21e-01 98.2% 87.8%
3253378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.50e-01 96.3% 82.2%
3884573 11.1.1.318 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N 0.55 39.0 4.24e-01 94.5% 90.0%
5055043 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 41.0 4.31e-01 96.3% 91.6%
3792868 11.1.5.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 0.54 48.0 4.64e-01 100.0% 87.1%
4116795 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 4.22e-01 96.3% 85.7%
3612604 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 43.0 3.41e-01 89.9% 97.1%
4356983 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 4.15e-01 96.3% 82.7%
3966483 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 4.59e-01 98.2% 99.1%
4538814 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 42.0 4.27e-01 99.1% 89.5%
4567712 10.32.1.48 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.51 46.0 4.41e-01 99.1% 92.8%
4680309 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.00e-01 100.0% 69.0%
2505848 1.2.1.2 beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat_C 0.50 43.0 3.99e-01 98.2% 81.1%
D3 high residues 326-354_366-427_471-527
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 45.0 4.58e-01 89.9% 65.3%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.64 60.0 5.79e-01 100.0% 98.8%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 33.0 3.91e-01 77.7% 72.8%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 57.0 5.69e-01 100.0% 96.6%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 58.0 5.65e-01 100.0% 95.6%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 57.0 5.66e-01 100.0% 98.7%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.62 29.0 4.16e-01 75.7% 100.0%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 34.0 4.04e-01 77.7% 79.0%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 32.0 3.71e-01 78.4% 67.9%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 54.0 5.47e-01 100.0% 95.9%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 30.0 3.71e-01 70.3% 73.7%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 30.0 3.88e-01 76.4% 85.0%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 32.0 4.02e-01 87.2% 86.2%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 31.0 3.76e-01 71.6% 76.3%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.59 29.0 3.55e-01 75.7% 71.9%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.59 34.0 3.75e-01 85.1% 69.8%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 35.0 3.84e-01 77.7% 70.5%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.82e-01 77.7% 77.9%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.57 46.0 4.68e-01 85.1% 98.6%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 4.57e-01 90.5% 83.7%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.82e-01 77.0% 82.0%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 4.38e-01 100.0% 81.7%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.56 36.0 4.09e-01 86.5% 85.0%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.80e-01 81.1% 79.0%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 35.0 3.52e-01 81.1% 64.2%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 4.37e-01 100.0% 86.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.53 42.0 4.40e-01 86.5% 91.2%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 4.06e-01 89.2% 100.0%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.53 42.0 4.48e-01 85.1% 95.4%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.75e-01 77.7% 83.0%
6bg2A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 33.0 3.53e-01 89.9% 72.0%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.52 37.0 4.01e-01 72.3% 95.2%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 4.08e-01 89.9% 74.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.51 46.0 4.13e-01 98.6% 89.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.76 67.0 6.57e-01 93.2% 95.0%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 55.0 6.34e-01 89.2% 100.0%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.75 62.0 4.95e-01 94.6% 47.4%
4954551 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 59.0 6.21e-01 90.5% 92.6%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.73 63.0 6.13e-01 91.9% 84.8%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.72 64.0 6.12e-01 92.6% 83.1%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.72 61.0 6.09e-01 89.2% 93.5%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.72 58.0 6.19e-01 89.2% 96.2%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.72 61.0 6.20e-01 89.2% 90.3%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 58.0 6.19e-01 87.8% 96.2%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.71 56.0 5.97e-01 100.0% 94.5%
4514734 1.1.13.42 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.71 50.0 5.75e-01 87.2% 97.3%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 57.0 6.22e-01 89.2% 100.0%
3972904 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.71 41.0 4.89e-01 84.5% 84.0%
5082881 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 57.0 6.19e-01 87.8% 100.0%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.70 59.0 6.02e-01 89.9% 94.5%
3921212 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.69 35.0 4.21e-01 77.7% 72.0%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 57.0 4.63e-01 90.5% 50.4%
4878666 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.67 58.0 6.01e-01 100.0% 98.6%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 59.0 5.80e-01 100.0% 96.2%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 59.0 5.77e-01 100.0% 98.8%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 43.0 4.51e-01 88.5% 75.9%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 59.0 5.73e-01 100.0% 98.8%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 59.0 5.81e-01 100.0% 99.4%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.63 58.0 5.65e-01 100.0% 95.6%
1124583 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.62 57.0 5.69e-01 100.0% 96.6%
3749000 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.62 33.0 3.72e-01 77.7% 65.2%
3825541 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.62 36.0 4.16e-01 80.4% 76.4%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 58.0 5.47e-01 100.0% 97.1%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.62 58.0 5.70e-01 99.3% 97.4%
3513366 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 58.0 5.45e-01 100.0% 98.3%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.61 56.0 5.32e-01 100.0% 97.1%
3659065 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 36.0 4.23e-01 79.7% 89.0%
3259730 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 39.0 4.43e-01 96.6% 92.7%
3224729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 35.0 4.23e-01 83.1% 97.9%
3481575 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.54 36.0 3.64e-01 77.7% 68.3%
3261290 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 38.0 4.13e-01 81.1% 86.4%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.53 42.0 4.43e-01 86.5% 92.5%
3611407 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.51 33.0 3.50e-01 81.1% 74.2%
4945314 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.82e-01 81.1% 85.8%