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CIDE-N_domain_protein

Euk-Vir

Mythimna_unipuncta_granulovirus_B

CIDE-N_domain_protein__YP_009345756__Mythimna_unipuncta_granulovirus_B__2169746

Identity

Accession:
YP_009345756 ↗
Protein ID:
CIDE-N_domain_protein
Kingdom:
euk

Quality

78.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_altermyunipunctae

TaxID: 2169746

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-103
PDB
Domain cluster: rep: CIDE_N__YP_009121817__Spodoptera_frugiperda_granulovirus__307454__D5-88
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02017.22 best CIDE-N 51.9 9.00e-14 72.0% 81.6%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d2kB00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.87 66.0 7.36e-01 96.0% 97.5%
5xpcA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.82 65.0 7.00e-01 100.0% 96.5%
1f2rI00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.80 63.0 6.30e-01 97.0% 82.0%
6larC01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 48.0 5.71e-01 75.0% 100.0%
2jx5A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.72 48.0 5.64e-01 91.0% 100.0%
2zeqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 52.0 5.79e-01 82.0% 97.4%
3jyuA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 58.0 6.10e-01 88.0% 98.9%
2kd0A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 47.0 5.46e-01 78.0% 98.6%
5ip4E00 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.68 51.0 5.49e-01 82.0% 92.9%
3kuzB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 49.0 4.77e-01 75.0% 99.1%
3w1sC00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 47.0 5.29e-01 89.0% 96.1%
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 47.0 5.33e-01 75.0% 98.7%
1d4bA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 49.0 4.59e-01 100.0% 64.8%
1c9fA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 47.0 4.97e-01 98.0% 89.7%
1zud400 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.63 40.0 4.73e-01 84.0% 98.5%
3cwiA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.62 41.0 4.75e-01 83.0% 100.0%
5mpoB00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.61 48.0 5.19e-01 94.0% 100.0%
1tygB00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.60 39.0 4.51e-01 81.0% 100.0%
2kl0A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.60 40.0 4.56e-01 73.0% 94.5%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 55.0 5.22e-01 100.0% 87.8%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 37.0 3.14e-01 100.0% 40.8%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.89e-01 97.0% 70.1%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 40.0 4.19e-01 100.0% 90.1%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 4.10e-01 100.0% 85.0%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 26.0 3.03e-01 78.0% 66.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3555707 221.1.1.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CIDE-N 0.91 66.0 7.22e-01 93.0% 88.2%
3388927 221.1.1.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CIDE-N 0.89 67.0 7.07e-01 98.0% 85.6%
2388485 221.1.1.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CIDE-N 0.85 66.0 7.03e-01 100.0% 90.9%
3935417 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.82 31.0 4.99e-01 89.0% 100.0%
3633950 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.80 55.0 5.81e-01 71.0% 94.4%
3935416 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.80 34.0 4.49e-01 94.0% 72.7%
3416710 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.79 55.0 6.33e-01 88.0% 96.0%
3749711 221.1.1.121 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DCX2_DCDC1 0.79 57.0 6.49e-01 95.0% 98.7%
3527315 221.1.1.19 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DCX 0.79 57.0 6.48e-01 95.0% 98.7%
3607467 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.77 54.0 5.72e-01 73.0% 85.6%
3737458 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.76 53.0 5.89e-01 72.0% 93.8%
3689050 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.76 54.0 5.82e-01 73.0% 95.3%
3930314 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.76 54.0 5.49e-01 74.0% 96.0%
3417101 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.76 54.0 6.00e-01 74.0% 98.8%
3394851 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.75 53.0 5.75e-01 73.0% 88.2%
3620089 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.75 52.0 5.10e-01 72.0% 72.7%
3680340 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.74 51.0 5.83e-01 74.0% 94.7%
3735348 221.1.1.110 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_2 0.74 50.0 5.37e-01 70.0% 98.8%
4976815 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 50.0 5.67e-01 70.0% 100.0%
3546707 221.1.1.181 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF27687 0.73 56.0 6.16e-01 82.0% 100.0%
3931934 330.9.1.0 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.72 39.0 4.81e-01 98.0% 83.1%
3269919 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.72 50.0 5.67e-01 80.0% 96.0%
3326750 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 48.0 5.55e-01 83.0% 100.0%
3394558 221.1.1.78 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Coilin_N 0.70 50.0 5.62e-01 73.0% 100.0%
3514946 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.69 59.0 5.88e-01 93.0% 98.1%
3933811 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.68 49.0 5.51e-01 86.0% 98.7%
2581404 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 56.0 5.85e-01 100.0% 94.6%
3721169 221.1.1.110 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_2 0.67 48.0 5.31e-01 75.0% 98.8%
999522 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.65 41.0 4.85e-01 82.0% 100.0%
3962833 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 51.0 5.00e-01 85.0% 81.8%
6205 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.63 40.0 4.76e-01 83.0% 98.5%
3284186 221.1.1.34 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › YukD 0.63 56.0 5.43e-01 97.0% 86.4%
4011049 221.1.1.110 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_2 0.63 49.0 4.42e-01 83.0% 60.7%
3935730 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.63 33.0 3.52e-01 72.0% 55.6%
3674876 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.60 44.0 3.95e-01 78.0% 55.1%
3513183 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.57 42.0 4.36e-01 96.0% 82.1%
3784543 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.55 40.0 4.34e-01 77.0% 90.6%
3731030 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.54 38.0 3.59e-01 83.0% 60.8%
3218019 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 36.0 3.91e-01 82.0% 82.4%
3715657 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.53 31.0 3.15e-01 76.0% 57.6%
3941277 386.1.1.251 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.52 40.0 2.88e-01 82.0% 29.1%
3630611 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 38.0 4.16e-01 83.0% 95.0%
4050887 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.51 43.0 3.32e-01 94.0% 93.8%
3585680 386.1.1.25 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 0.51 38.0 4.06e-01 98.0% 87.8%
3600347 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.51 32.0 3.17e-01 76.0% 57.3%
5010212 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 29.0 2.67e-01 99.0% 40.7%