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CI

Euk-Vir

Lupinus_mosaic_virus

CI__YP_004123946__Lupinus_mosaic_virus__573615

Identity

Accession:
YP_004123946 ↗
Protein ID:
CI
Kingdom:
euk

Quality

82.7 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Lupinus_mosaic_virus

TaxID: 573615

Cluster

View cluster (88 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-203
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00270.36 best DEAD 47.2 3.00e-12 78.1% 76.0%
PF07652.21 Flavi_DEAD 22.7 1.10e-04 68.6% 63.5%
D2 high residues 219-367
PDB
Domain cluster: rep: B962L__YP_009703129__African_swine_fever_virus__10497__D237-425
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00271.38 best Helicase_C 59.5 4.80e-16 89.3% 88.2%
D3 high residues 541-634
PDB
D4 medium residues 373-435_448-464
PDB
Domain cluster: rep: CI_protein__YP_002956092__Triticum_mosaic_virus__431317__D383-438
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08440.16 best Poty_PP 54.9 1.00e-14 82.5% 18.4%
D5 medium residues 436-447_465-526
PDB
Domain cluster: rep: CI__YP_010088123__Dendrobium_chlorotic_mosaic_virus__2562807__D462-522
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08440.16 best Poty_PP 27.8 1.80e-06 96.0% 18.4%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gruA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.58 32.0 3.05e-01 87.8% 46.5%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 43.0 4.18e-01 98.6% 75.3%
4i16A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 30.0 2.84e-01 90.5% 45.6%
3nc3B00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 44.0 2.84e-01 98.6% 70.1%
2l4dA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 43.0 3.86e-01 94.6% 95.3%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 36.0 2.79e-01 74.3% 52.6%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 44.0 3.86e-01 97.3% 80.4%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.50 35.0 3.39e-01 74.3% 94.4%
2dceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 4.06e-01 89.2% 97.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928883 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.60 45.0 3.04e-01 83.8% 60.0%
4172535 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 36.0 3.78e-01 94.6% 75.4%
3972963 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 37.0 3.88e-01 98.6% 77.9%
3603323 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.55 33.0 3.78e-01 86.5% 81.8%
3276622 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 34.0 3.40e-01 94.6% 61.3%
3580043 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 32.0 3.58e-01 87.8% 80.0%
4980053 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 35.0 3.73e-01 89.2% 79.4%
165918 620.1.1.6 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 0.53 39.0 3.04e-01 81.1% 64.9%
4938587 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 34.0 3.75e-01 91.9% 83.3%
3291096 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 33.0 3.76e-01 94.6% 89.1%
3968306 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 37.0 2.56e-01 77.0% 82.3%
3963117 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.50 44.0 3.59e-01 100.0% 69.7%
5024055 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.50 33.0 3.46e-01 94.6% 72.9%