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CI_protein
Euk-VirTriticum_mosaic_virus
CI_protein__YP_002956092__Triticum_mosaic_virus__431317
Identity
- Accession:
- YP_002956092 ↗
- Protein ID:
- CI_protein
- Kingdom:
- euk
Quality
78.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Poacevirus›
Triticum_mosaic_virus
TaxID: 431317
Cluster
View cluster (88 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 58-203
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00270.36 best | DEAD | 38.7 | 1.20e-09 | 93.8% | 77.2% |
D2
high
residues 222-375
Domain cluster:
rep: B962L__YP_009703129__African_swine_fever_virus__10497__D237-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00271.38 best | Helicase_C | 39.8 | 6.60e-10 | 82.5% | 91.8% |
D3
high
residues 551-642
D4
medium
residues 383-438
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qx3A04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.63 | 49.0 | 4.12e-01 | 85.7% | 78.0% |
| 1of9A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.56 | 43.0 | 4.04e-01 | 92.9% | 94.8% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 37.0 | 3.49e-01 | 73.2% | 83.3% |
| 2dbhA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 35.0 | 3.17e-01 | 94.6% | 46.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3955935 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.65 | 51.0 | 3.51e-01 | 91.1% | 37.3% |
| 5012559 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.58 | 41.0 | 3.79e-01 | 75.0% | 85.3% |
D5
medium
residues 439-538
Domain cluster:
rep: CI_protein__YP_009509083__Tomato_mild_mottle_virus__178599__D425-525
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08440.16 best | Poty_PP | 29.8 | 4.70e-07 | 100.0% | 34.7% |