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CP002495.1__ADX81340.1__EF62_phi0016__00016
Bact-VirCP002495.1__ADX81340.1__EF62_phi0016__00016
Identity
- Accession:
- CP002495 ↗
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-88
Domain cluster:
rep: MN830254.1__QHJ74866.1__X__00050__D1-75
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14297.13 best | Lin1244_N | 31.7 | 2.80e-07 | 100.0% | 72.9% |
D2
high
residues 199-285
Domain cluster:
rep: MK448386.1__QBX08381.1__JavanS256_0009__00009__D174-260
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07261.17 best | DnaB_2 | 61.8 | 5.90e-17 | 85.1% | 82.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.88 | 66.0 | 7.04e-01 | 78.2% | 97.4% |
| 2zc2A00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.86 | 70.0 | 7.50e-01 | 85.1% | 98.7% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 39.0 | 4.94e-01 | 73.6% | 86.5% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 23.0 | 2.69e-01 | 70.1% | 41.8% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 40.0 | 4.67e-01 | 75.9% | 91.5% |
| 2jp7A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 39.0 | 4.57e-01 | 74.7% | 91.2% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.59 | 40.0 | 3.26e-01 | 94.3% | 38.0% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 25.0 | 2.68e-01 | 78.2% | 42.3% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 35.0 | 3.96e-01 | 74.7% | 85.0% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.57 | 39.0 | 3.26e-01 | 70.1% | 87.8% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.57 | 41.0 | 3.46e-01 | 75.9% | 76.4% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 36.0 | 3.46e-01 | 70.1% | 97.0% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 36.0 | 3.06e-01 | 73.6% | 76.2% |
| 4mhlA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 36.0 | 3.00e-01 | 75.9% | 59.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587918 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.89 | 84.0 | 8.17e-01 | 100.0% | 91.6% |
| 4498620 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.88 | 67.0 | 7.48e-01 | 83.9% | 98.6% |
| 3989035 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.87 | 77.0 | 7.51e-01 | 97.7% | 86.3% |
| 4048400 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.86 | 73.0 | 7.44e-01 | 94.3% | 91.8% |
| 4031651 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.80 | 64.0 | 6.23e-01 | 86.2% | 77.9% |
| 3254417 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 53.0 | 5.65e-01 | 81.6% | 93.3% |
| 4177393 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 36.0 | 2.97e-01 | 81.6% | 31.7% |
| 4038138 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 34.0 | 2.95e-01 | 97.7% | 33.1% |
| 3736610 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 52.0 | 5.04e-01 | 98.9% | 96.0% |
| 3774121 | 150.1.1.119 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Clusterin | 0.55 | 40.0 | 3.27e-01 | 77.0% | 80.6% |
| 3686419 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.54 | 39.0 | 3.37e-01 | 78.2% | 85.3% |
| 3331595 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.54 | 42.0 | 3.82e-01 | 88.5% | 73.1% |
| 3419627 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.54 | 39.0 | 3.24e-01 | 75.9% | 68.0% |
| 4052416 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.53 | 25.0 | 2.68e-01 | 78.2% | 47.5% |
| 3313420 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.53 | 38.0 | 3.29e-01 | 75.9% | 91.4% |
| 4034092 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.51 | 25.0 | 2.66e-01 | 77.0% | 52.0% |