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CP002495.1__ADX81344.1__EF62_phi0020__00020

Bact-Vir

CP002495.1__ADX81344.1__EF62_phi0020__00020

Identity

Accession:
CP002495 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_EF62phi

TaxID: 977801

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-88
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.86 65.0 5.49e-01 100.0% 51.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.86 64.0 6.74e-01 100.0% 86.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.86 62.0 6.71e-01 100.0% 91.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 61.0 5.61e-01 100.0% 61.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 62.0 6.32e-01 100.0% 82.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.81 62.0 6.42e-01 100.0% 87.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.79 73.0 5.75e-01 100.0% 52.3%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 55.0 6.03e-01 94.8% 91.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 5.59e-01 100.0% 70.3%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.87e-01 94.8% 89.6%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 6.44e-01 100.0% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.51e-01 100.0% 51.0%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.10e-01 100.0% 36.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.77e-01 100.0% 60.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.68 56.0 5.33e-01 100.0% 79.1%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 52.0 4.17e-01 93.1% 76.2%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.24e-01 100.0% 86.4%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 44.0 3.40e-01 89.7% 31.6%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 53.0 3.76e-01 100.0% 39.5%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.60 52.0 3.67e-01 100.0% 73.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.62e-01 100.0% 67.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 52.0 3.54e-01 100.0% 34.1%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 3.95e-01 100.0% 55.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 41.0 4.08e-01 84.5% 77.0%
2cu2A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 42.0 2.66e-01 86.2% 44.2%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 36.0 2.78e-01 89.7% 27.5%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 44.0 3.31e-01 94.8% 77.5%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 36.0 3.10e-01 75.9% 71.6%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.51 41.0 3.05e-01 87.9% 52.9%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.56e-01 100.0% 69.2%
3ozqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 41.0 3.06e-01 100.0% 33.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.99 93.0 8.60e-01 100.0% 81.4%
3590858 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.98 88.0 8.76e-01 96.6% 91.7%
3588736 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.95 87.0 8.28e-01 98.3% 86.2%
3587030 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.94 87.0 8.11e-01 100.0% 81.4%
3503291 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.89 68.0 5.30e-01 100.0% 41.8%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.88 66.0 6.54e-01 100.0% 76.7%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 65.0 5.54e-01 100.0% 51.1%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 65.0 5.53e-01 100.0% 51.1%
3586953 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 75.0 7.16e-01 100.0% 83.1%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 64.0 5.71e-01 100.0% 57.5%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.86 62.0 6.39e-01 100.0% 80.0%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 64.0 5.56e-01 100.0% 54.1%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 63.0 5.39e-01 100.0% 51.1%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.84 62.0 6.69e-01 100.0% 90.0%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.83 65.0 4.71e-01 100.0% 33.1%
3999723 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 62.0 4.48e-01 100.0% 30.7%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.81 61.0 4.70e-01 100.0% 38.3%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 61.0 6.30e-01 100.0% 87.3%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.79 59.0 6.06e-01 100.0% 83.6%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 62.0 5.95e-01 100.0% 75.4%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 61.0 5.05e-01 100.0% 50.5%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 62.0 5.54e-01 100.0% 62.5%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 60.0 5.26e-01 100.0% 57.6%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 68.0 5.96e-01 100.0% 97.6%
4033182 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.75 68.0 5.27e-01 100.0% 60.0%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 58.0 4.99e-01 100.0% 54.4%
4680746 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.74 65.0 5.90e-01 98.3% 73.3%
4278184 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.73 66.0 5.87e-01 100.0% 71.2%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 4.02e-01 100.0% 24.2%
4654204 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.73 64.0 5.51e-01 100.0% 62.9%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.73 62.0 5.85e-01 100.0% 78.6%
3629316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 4.98e-01 100.0% 52.0%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.72 66.0 5.77e-01 100.0% 81.2%
3230113 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.72 66.0 3.91e-01 100.0% 15.2%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.08e-01 100.0% 55.8%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.71 56.0 4.30e-01 100.0% 39.2%
3642001 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 65.0 6.08e-01 100.0% 84.3%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 64.0 4.48e-01 100.0% 41.7%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 63.0 4.35e-01 100.0% 33.2%
3595169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 64.0 6.02e-01 100.0% 87.1%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 4.46e-01 100.0% 44.3%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 63.0 5.26e-01 100.0% 75.8%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.69 60.0 5.56e-01 98.3% 76.0%
5033600 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 46.0 4.94e-01 93.1% 81.6%
3996279 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.69 54.0 4.91e-01 100.0% 63.7%
3399407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.05e-01 100.0% 87.0%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.73e-01 100.0% 60.0%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.99e-01 100.0% 69.9%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.10e-01 100.0% 79.4%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 60.0 5.23e-01 100.0% 84.7%
3480659 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.64 57.0 4.16e-01 100.0% 39.4%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.62 55.0 4.93e-01 100.0% 73.8%
3729666 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.39e-01 100.0% 53.6%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.98e-01 100.0% 80.0%
3480657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.12e-01 100.0% 65.6%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.59 53.0 3.91e-01 100.0% 44.0%
4974463 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 48.0 3.51e-01 93.1% 41.7%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 51.0 4.64e-01 100.0% 75.0%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.78e-01 100.0% 84.3%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.34e-01 100.0% 74.5%
4011774 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 46.0 3.28e-01 98.3% 52.4%
5013819 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.53 44.0 4.25e-01 89.7% 93.8%
3584246 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.52 43.0 3.58e-01 94.8% 51.9%
3619225 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.52 42.0 3.05e-01 96.6% 30.0%
5045468 325.1.6.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.52 36.0 2.69e-01 74.1% 94.7%
3686862 206.1.1.28 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.50 41.0 2.50e-01 93.1% 24.1%