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CP002495.1__ADX81369.1__EF62_phi0045__00045

Bact-Vir

CP002495.1__ADX81369.1__EF62_phi0045__00045

Identity

Accession:
CP002495 ↗
Kingdom:
phage

Quality

58.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_EF62phi

TaxID: 977801

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 312-458
PDB
Domain cluster: rep: NC_041949.1__YP_009603225.1__FDH66_gp61__00037__D5-161
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.74 70.0 6.10e-01 100.0% 71.4%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 59.0 6.29e-01 99.3% 94.6%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 63.0 5.78e-01 95.9% 94.1%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 46.0 4.99e-01 82.3% 84.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 21.0 3.64e-01 94.6% 95.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 22.0 3.46e-01 98.6% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 23.0 3.55e-01 72.8% 100.0%
2ll3A00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.51 23.0 3.06e-01 95.2% 81.4%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.97e-01 76.2% 98.4%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.50 22.0 3.26e-01 95.2% 100.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.71 57.0 6.18e-01 94.6% 100.0%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 37.0 4.59e-01 81.0% 86.7%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.67 57.0 5.82e-01 96.6% 95.7%
224033 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.66 47.0 5.17e-01 82.3% 91.4%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.66 38.0 3.88e-01 81.6% 57.3%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.65 54.0 5.58e-01 96.6% 94.8%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.65 45.0 5.12e-01 81.6% 97.1%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.65 37.0 3.90e-01 81.0% 60.0%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 38.0 4.28e-01 86.4% 75.5%
4562486 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.64 56.0 5.52e-01 99.3% 89.7%
4978402 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 57.0 5.46e-01 98.0% 95.3%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 26.0 4.02e-01 98.6% 100.0%
5040936 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 57.0 5.56e-01 99.3% 98.8%
5014946 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 36.0 3.86e-01 81.6% 63.8%
3963455 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 54.0 5.49e-01 95.2% 95.9%
3970579 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 53.0 5.31e-01 93.2% 94.0%
3972547 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 54.0 5.29e-01 95.2% 88.1%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 23.0 3.75e-01 74.8% 100.0%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 23.0 3.70e-01 74.1% 100.0%
3584224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 34.0 3.92e-01 91.2% 78.1%
3877485 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 34.0 4.22e-01 88.4% 96.5%
4041829 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.58 50.0 4.34e-01 94.6% 87.7%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 22.0 3.41e-01 72.8% 100.0%
3900017 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.52 29.0 3.15e-01 89.8% 63.3%
5029131 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.51 39.0 4.16e-01 86.4% 90.0%
3501914 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 28.0 3.48e-01 98.0% 89.4%
4034335 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.51 35.0 3.98e-01 84.4% 94.5%
D2 medium residues 1-177
PDB
D3 medium residues 211-289
PDB