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CP003186.1__AFK87725.1__Tsac_2872__00044
Bact-VirCP003186.1__AFK87725.1__Tsac_2872__00044
Identity
- Accession:
- CP003186 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Taxonomy
TaxID: 1126885
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3duzA03 | 6.10.250.3010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 53.0 | 4.96e-01 | 84.4% | 59.7% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.75 | 61.0 | 4.69e-01 | 89.1% | 96.5% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.75 | 53.0 | 4.44e-01 | 78.1% | 44.4% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.70 | 60.0 | 4.76e-01 | 98.4% | 60.3% |
| 4xmqA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 51.0 | 4.03e-01 | 81.2% | 100.0% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.66 | 46.0 | 3.24e-01 | 73.4% | 85.8% |
| 3u6uC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.66 | 54.0 | 3.54e-01 | 89.1% | 33.5% |
| 4oycB00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.64 | 52.0 | 4.67e-01 | 89.1% | 86.5% |
| 3p8aA02 | 2.60.40.4320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 40.0 | 3.59e-01 | 76.6% | 44.4% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.62 | 49.0 | 4.01e-01 | 92.2% | 85.9% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 32.0 | 3.23e-01 | 73.4% | 48.5% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.60 | 41.0 | 2.92e-01 | 70.3% | 43.7% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 55.0 | 4.26e-01 | 100.0% | 82.7% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.59 | 44.0 | 4.02e-01 | 81.2% | 72.9% |
| 2qqzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 40.0 | 3.38e-01 | 71.9% | 40.9% |
| 6yleA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 2.84e-01 | 85.9% | 84.4% |
| 3g7qA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 44.0 | 3.05e-01 | 82.8% | 91.1% |
| 2g0iA00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.57 | 50.0 | 4.15e-01 | 98.4% | 55.9% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 38.0 | 3.33e-01 | 70.3% | 45.1% |
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.57 | 43.0 | 3.74e-01 | 84.4% | 72.4% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 2.60e-01 | 81.2% | 31.0% |
| 2oo4A02 | 3.30.70.3310 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 3.30e-01 | 73.4% | 82.9% |
| 1nmoA02 | 3.40.1390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like | 0.55 | 40.0 | 3.28e-01 | 78.1% | 64.8% |
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 46.0 | 3.80e-01 | 98.4% | 60.7% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 3.40e-01 | 78.1% | 73.2% |
| 7o06C01 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.53 | 36.0 | 3.18e-01 | 70.3% | 63.7% |
| 2rbcA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 43.0 | 2.78e-01 | 89.1% | 91.8% |
| 4zovB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.57e-01 | 92.2% | 33.0% |
| 1vq8300 | 3.10.450.80 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.18e-01 | 73.4% | 89.1% |
| 3e07A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.50 | 36.0 | 3.25e-01 | 75.0% | 85.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4968047 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.82 | 60.0 | 4.98e-01 | 76.6% | 58.1% |
| 4341414 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.74 | 52.0 | 3.29e-01 | 73.4% | 29.5% |
| 3998938 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.73 | 57.0 | 3.29e-01 | 93.8% | 10.2% |
| 4597437 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.73 | 63.0 | 3.99e-01 | 96.9% | 34.7% |
| 3656217 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.73 | 64.0 | 3.96e-01 | 98.4% | 23.1% |
| 4003318 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.72 | 63.0 | 3.99e-01 | 98.4% | 25.9% |
| 5042381 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.71 | 53.0 | 3.28e-01 | 81.2% | 15.9% |
| 3178801 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.71 | 62.0 | 3.90e-01 | 96.9% | 34.2% |
| 4647466 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.71 | 62.0 | 3.98e-01 | 100.0% | 35.6% |
| 3172514 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.71 | 61.0 | 3.88e-01 | 98.4% | 26.4% |
| 3476904 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.71 | 62.0 | 3.89e-01 | 96.9% | 26.4% |
| 3536880 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.70 | 60.0 | 3.82e-01 | 96.9% | 34.8% |
| 3178507 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.70 | 59.0 | 3.80e-01 | 96.9% | 34.8% |
| 3476713 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.69 | 59.0 | 3.75e-01 | 96.9% | 34.6% |
| 4880604 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.68 | 61.0 | 4.71e-01 | 100.0% | 45.8% |
| 3215880 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.68 | 60.0 | 3.77e-01 | 98.4% | 54.8% |
| 3798502 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.67 | 57.0 | 3.68e-01 | 100.0% | 34.1% |
| 3798149 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.67 | 56.0 | 3.73e-01 | 100.0% | 36.6% |
| 3622749 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.66 | 56.0 | 3.68e-01 | 100.0% | 35.2% |
| 3787121 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.66 | 50.0 | 4.07e-01 | 84.4% | 42.4% |
| 3234505 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.66 | 55.0 | 3.65e-01 | 100.0% | 35.5% |
| 3579466 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.65 | 48.0 | 5.15e-01 | 79.7% | 92.7% |
| 4500042 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.65 | 55.0 | 3.33e-01 | 100.0% | 19.1% |
| 4120506 | 243.11.1.4 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 | 0.64 | 45.0 | 4.25e-01 | 78.1% | 60.0% |
| 3629627 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.63 | 43.0 | 4.15e-01 | 71.9% | 66.7% |
| 5039423 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 46.0 | 3.66e-01 | 79.7% | 53.1% |
| 3792565 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.61 | 42.0 | 3.63e-01 | 71.9% | 55.0% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.60 | 44.0 | 4.00e-01 | 78.1% | 58.9% |
| 5000176 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 42.0 | 2.72e-01 | 75.0% | 18.8% |
| 3280028 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.60 | 41.0 | 3.00e-01 | 70.3% | 45.3% |
| 3594326 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.60 | 44.0 | 4.17e-01 | 79.7% | 66.3% |
| 3614646 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.58 | 54.0 | 3.97e-01 | 100.0% | 76.8% |
| 4955419 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.58 | 48.0 | 4.17e-01 | 100.0% | 58.1% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.57 | 41.0 | 3.76e-01 | 78.1% | 61.4% |
| 4991403 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.56 | 47.0 | 2.96e-01 | 93.8% | 52.8% |
| 4016322 | 109.4.1.1304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 | 0.55 | 42.0 | 3.03e-01 | 82.8% | 37.3% |
| 3708854 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.55 | 35.0 | 3.80e-01 | 70.3% | 84.0% |
| 4420776 | 3492.1.1.1 ↗ | a+b two layers › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › MukE | 0.53 | 40.0 | 2.72e-01 | 79.7% | 31.8% |
| 4990951 | 3535.1.1.0 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 | 0.52 | 41.0 | 3.35e-01 | 90.6% | 45.2% |
| 3981752 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.51 | 43.0 | 3.42e-01 | 92.2% | 61.5% |
| 4266100 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.51 | 40.0 | 2.65e-01 | 96.9% | 28.8% |