←Back to structures
CP003186.1__AFK87727.1__Tsac_2874__00046
Bact-VirCP003186.1__AFK87727.1__Tsac_2874__00046
Identity
- Accession:
- CP003186 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Taxonomy
TaxID: 1126885
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-93_234-242
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n2kA01 | 2.60.40.1860 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain | 0.60 | 47.0 | 4.00e-01 | 87.0% | 87.4% |
| 6r2nA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 41.0 | 3.23e-01 | 71.0% | 57.9% |
| 3c6aA00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 51.0 | 3.79e-01 | 100.0% | 41.4% |
| 2zf8A01 | 2.60.40.2540 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 46.0 | 3.64e-01 | 87.0% | 85.7% |
| 1wn9A00 | 3.40.1530.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › TTHA1528-like | 0.59 | 50.0 | 4.24e-01 | 100.0% | 70.6% |
| 4wz9A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 41.0 | 3.81e-01 | 73.9% | 100.0% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 3.93e-01 | 76.8% | 67.6% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 41.0 | 4.03e-01 | 76.8% | 100.0% |
| 1bqnA05 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 41.0 | 3.29e-01 | 75.4% | 77.9% |
| 4qhpA04 | 2.60.40.1840 | Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain | 0.57 | 40.0 | 3.52e-01 | 73.9% | 99.0% |
| 7y9aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 44.0 | 4.03e-01 | 87.0% | 94.8% |
| 3cqyB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 39.0 | 2.92e-01 | 73.9% | 51.6% |
| 5oj2A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 4.09e-01 | 87.0% | 98.9% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 42.0 | 3.91e-01 | 87.0% | 65.2% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 41.0 | 3.58e-01 | 82.6% | 82.9% |
| 3v0rA01 | 2.40.350.20 | Mainly Beta › Beta Barrel › AOC barrel-like › | 0.54 | 42.0 | 3.59e-01 | 87.0% | 73.3% |
| 4bgjA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 37.0 | 3.16e-01 | 72.5% | 83.1% |
| 2g8kA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 38.0 | 3.07e-01 | 73.9% | 95.6% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.54 | 43.0 | 2.94e-01 | 85.5% | 49.2% |
| 1aozA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 42.0 | 3.11e-01 | 92.8% | 73.3% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 35.0 | 2.98e-01 | 71.0% | 53.8% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 39.0 | 3.67e-01 | 82.6% | 72.5% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 39.0 | 2.99e-01 | 78.3% | 62.1% |
| 6vg1A06 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.53 | 41.0 | 3.67e-01 | 87.0% | 91.1% |
| 5szrA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 40.0 | 3.59e-01 | 87.0% | 90.5% |
| 5k6uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.72e-01 | 87.0% | 93.6% |
| 8egxA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 40.0 | 3.60e-01 | 85.5% | 96.9% |
| 1d1rA00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.52 | 36.0 | 3.46e-01 | 73.9% | 95.2% |
| 4xhzA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 40.0 | 3.53e-01 | 87.0% | 92.5% |
| 4l3aA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.75e-01 | 87.0% | 90.0% |
| 7sz8A03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 39.0 | 3.59e-01 | 87.0% | 95.8% |
| 5oj2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.34e-01 | 79.7% | 100.0% |
| 4paaA03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.50 | 39.0 | 2.98e-01 | 89.9% | 84.1% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032338 | 896.1.1.7 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DUF7147 | 0.73 | 65.0 | 5.33e-01 | 100.0% | 72.8% |
| 4938125 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.66 | 53.0 | 4.96e-01 | 88.4% | 96.5% |
| 4439294 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.63 | 43.0 | 3.55e-01 | 71.0% | 59.2% |
| 3609915 | 2484.8.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 | 0.62 | 43.0 | 2.83e-01 | 72.5% | 80.7% |
| 4306959 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.62 | 43.0 | 3.47e-01 | 71.0% | 85.6% |
| 4351187 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.62 | 44.0 | 3.49e-01 | 73.9% | 52.6% |
| 4037664 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.62 | 43.0 | 3.50e-01 | 72.5% | 57.6% |
| 4221376 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.62 | 42.0 | 3.41e-01 | 71.0% | 52.3% |
| 4679171 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.61 | 42.0 | 3.58e-01 | 72.5% | 89.6% |
| 4107517 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.61 | 43.0 | 3.73e-01 | 73.9% | 65.7% |
| 4927275 | 211.1.1.24 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N | 0.61 | 47.0 | 3.91e-01 | 87.0% | 46.9% |
| 4628536 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.61 | 43.0 | 3.58e-01 | 73.9% | 92.2% |
| 4294687 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.61 | 42.0 | 3.55e-01 | 72.5% | 86.1% |
| 4680971 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 42.0 | 3.48e-01 | 73.9% | 84.8% |
| 3205486 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 41.0 | 3.44e-01 | 72.5% | 76.8% |
| 4218926 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 42.0 | 3.46e-01 | 72.5% | 58.3% |
| 4369846 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 41.0 | 3.46e-01 | 72.5% | 58.3% |
| 4219295 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 41.0 | 3.35e-01 | 72.5% | 53.8% |
| 3989194 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 42.0 | 3.42e-01 | 72.5% | 79.2% |
| 4039156 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 42.0 | 3.57e-01 | 73.9% | 56.4% |
| 4544592 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.27e-01 | 72.5% | 56.4% |
| 3964987 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 42.0 | 3.38e-01 | 73.9% | 53.1% |
| 4302724 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.44e-01 | 72.5% | 56.7% |
| 4067862 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 42.0 | 3.53e-01 | 73.9% | 58.3% |
| 4564098 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.45e-01 | 73.9% | 55.8% |
| 4365245 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.39e-01 | 72.5% | 52.8% |
| 4442902 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.36e-01 | 72.5% | 57.6% |
| 3291744 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.59 | 41.0 | 3.97e-01 | 73.9% | 85.0% |
| 4954572 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.39e-01 | 72.5% | 57.5% |
| 4333153 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.59 | 41.0 | 3.34e-01 | 73.9% | 59.2% |
| 3315568 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.58 | 41.0 | 4.12e-01 | 73.9% | 98.6% |
| 4555995 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.58 | 40.0 | 3.36e-01 | 72.5% | 55.0% |
| 3221278 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 42.0 | 2.77e-01 | 76.8% | 25.6% |
| 4969580 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.58 | 40.0 | 2.86e-01 | 73.9% | 85.5% |
| 4010765 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.58 | 40.0 | 3.34e-01 | 73.9% | 56.8% |
| 4028811 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.57 | 49.0 | 4.20e-01 | 98.6% | 78.3% |
| 4019053 | 11.1.1.837 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TAF2_3rd | 0.57 | 41.0 | 3.25e-01 | 75.4% | 95.0% |
| 5035771 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 41.0 | 3.36e-01 | 76.8% | 55.4% |
| 3741704 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.56 | 43.0 | 3.56e-01 | 84.1% | 70.8% |
| 3708143 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.56 | 48.0 | 2.91e-01 | 100.0% | 80.8% |
| 4317535 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.56 | 38.0 | 2.62e-01 | 71.0% | 50.6% |
| 4206673 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.55 | 38.0 | 3.19e-01 | 72.5% | 85.6% |
| 3931129 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 43.0 | 2.85e-01 | 84.1% | 24.1% |
| 4156379 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.55 | 38.0 | 3.01e-01 | 73.9% | 58.8% |
| 3338071 | 2484.1.1.215 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 | 0.54 | 45.0 | 3.51e-01 | 95.7% | 55.2% |
| 4636438 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.54 | 36.0 | 3.12e-01 | 71.0% | 57.5% |
| 5035818 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.54 | 37.0 | 3.17e-01 | 71.0% | 58.3% |
| 3599949 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 43.0 | 3.95e-01 | 89.9% | 92.6% |
| 3932471 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.54 | 42.0 | 2.72e-01 | 87.0% | 23.8% |
| 4253671 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.53 | 36.0 | 2.87e-01 | 71.0% | 58.1% |
| 4045725 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.53 | 37.0 | 3.11e-01 | 73.9% | 55.2% |
| 4975699 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 44.0 | 2.80e-01 | 100.0% | 42.1% |
| 3469667 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 40.0 | 2.50e-01 | 84.1% | 22.4% |
| 3514912 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.52 | 38.0 | 3.72e-01 | 76.8% | 100.0% |
| 4438950 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 35.0 | 2.66e-01 | 71.0% | 87.0% |
| 4216155 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 35.0 | 3.01e-01 | 71.0% | 55.8% |
| 4377336 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 36.0 | 2.95e-01 | 73.9% | 77.8% |
| 3477274 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.48e-01 | 87.0% | 99.1% |
| 4278429 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 43.0 | 3.52e-01 | 94.2% | 89.2% |
| 4222724 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.50 | 39.0 | 2.53e-01 | 85.5% | 93.5% |
| 5046724 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.50 | 35.0 | 3.06e-01 | 75.4% | 92.2% |
D2
high
residues 95-216
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 27.0 | 3.82e-01 | 77.9% | 86.9% |
| 5bncA02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.56 | 31.0 | 3.51e-01 | 86.1% | 69.9% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 35.0 | 3.92e-01 | 100.0% | 84.4% |
| 1vjhA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 37.0 | 3.77e-01 | 95.1% | 70.0% |
| 3a0rA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 40.0 | 4.29e-01 | 92.6% | 88.7% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 4.16e-01 | 93.4% | 74.6% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 4.56e-01 | 92.6% | 98.1% |
| 4f3lA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 45.0 | 4.53e-01 | 92.6% | 97.5% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 25.0 | 3.02e-01 | 75.4% | 67.9% |
| 3nv0B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.49e-01 | 92.6% | 64.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022840 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.71 | 37.0 | 4.32e-01 | 90.2% | 70.6% |
| 4031789 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.68 | 35.0 | 4.77e-01 | 77.0% | 100.0% |
| 5005914 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.68 | 36.0 | 4.31e-01 | 94.3% | 74.1% |
| 3956000 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.62 | 32.0 | 4.04e-01 | 85.2% | 85.7% |
| 4876264 | 275.1.1.4 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_5 | 0.61 | 39.0 | 3.03e-01 | 95.9% | 28.6% |
| 3967405 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.61 | 30.0 | 3.90e-01 | 78.7% | 90.0% |
| 3927095 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 35.0 | 3.74e-01 | 95.9% | 66.7% |
| 3902105 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.56 | 45.0 | 4.34e-01 | 92.6% | 75.7% |
| 3687773 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 45.0 | 4.54e-01 | 95.1% | 84.8% |
| 4000362 | 223.2.1.36 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 | 0.55 | 34.0 | 3.66e-01 | 95.1% | 71.4% |
| 1177460 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 40.0 | 4.12e-01 | 92.6% | 79.7% |
| 3237613 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 33.0 | 3.25e-01 | 96.7% | 56.2% |
| 3588721 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 41.0 | 4.25e-01 | 95.1% | 86.1% |
| 5028212 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 38.0 | 3.60e-01 | 73.8% | 99.3% |
| 5082939 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 41.0 | 3.97e-01 | 91.8% | 74.8% |
| 3253552 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.52 | 30.0 | 3.22e-01 | 95.9% | 64.8% |
| 5029671 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.52 | 37.0 | 3.44e-01 | 74.6% | 82.5% |
| 4970452 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.52 | 39.0 | 4.18e-01 | 92.6% | 94.3% |
| 5061316 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 39.0 | 3.86e-01 | 95.1% | 76.9% |
| 3882543 | 243.3.1.4 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N | 0.51 | 32.0 | 3.50e-01 | 98.4% | 78.9% |
| 3187112 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.90e-01 | 95.1% | 81.8% |
| 4963860 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.50 | 38.0 | 3.96e-01 | 92.6% | 87.0% |