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CP011103.1__AQY52625.1__UE46_p05200__00014

Bact-Vir

CP011103.1__AQY52625.1__UE46_p05200__00014

Identity

Accession:
CP011103 ↗
Kingdom:
phage

Quality

61.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 82-150
PDB
D2 medium residues 162-221
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.66 55.0 4.98e-01 98.3% 89.8%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.63 51.0 5.06e-01 91.7% 95.2%
2rqpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.27e-01 90.0% 60.2%
3cr3A00 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.61 51.0 3.66e-01 98.3% 86.5%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 51.0 4.94e-01 96.7% 89.7%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 52.0 3.91e-01 100.0% 73.0%
6azyA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.59 43.0 3.43e-01 80.0% 81.7%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 41.0 3.19e-01 75.0% 56.2%
2j5vB01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.57 47.0 3.28e-01 96.7% 61.0%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 45.0 3.36e-01 91.7% 59.2%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.57 48.0 3.92e-01 96.7% 55.3%
2vqgA00 1.10.10.1280 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C 0.56 43.0 4.01e-01 83.3% 71.1%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 40.0 3.90e-01 95.0% 70.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.56 45.0 4.00e-01 96.7% 87.2%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.55 43.0 3.54e-01 91.7% 89.7%
1c20A00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.54 44.0 3.56e-01 96.7% 48.4%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 41.0 3.55e-01 88.3% 53.8%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 41.0 3.02e-01 96.7% 29.2%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.53 41.0 3.35e-01 91.7% 82.7%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 41.0 3.43e-01 95.0% 83.5%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 42.0 3.31e-01 96.7% 69.7%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 44.0 3.39e-01 96.7% 97.9%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.92e-01 100.0% 89.1%
7ekoO01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 41.0 3.17e-01 96.7% 67.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500015 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 66.0 5.25e-01 93.3% 65.8%
3239892 4336.2.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.66 46.0 4.02e-01 73.3% 83.9%
143098 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.63 51.0 4.03e-01 91.7% 66.7%
3832446 178.1.1.1 alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.62 46.0 4.31e-01 83.3% 92.3%
4153340 2004.1.1.363 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.60 47.0 2.72e-01 95.0% 8.7%
3179815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.66e-01 98.3% 90.7%
4085373 101.35.1.21 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF494 0.57 41.0 4.37e-01 93.3% 94.0%
5042936 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.56e-01 98.3% 98.5%
3239394 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.56 40.0 3.93e-01 95.0% 68.6%
3825828 185.1.1.0 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 0.56 43.0 3.69e-01 98.3% 52.6%
3227580 3065.1.1.1 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.56 41.0 3.26e-01 88.3% 36.3%
3520876 3352.1.1.19 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans2 0.53 40.0 2.50e-01 86.7% 12.6%
4989195 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 44.0 3.60e-01 96.7% 92.2%
4394038 148.1.3.3 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red 0.52 36.0 3.60e-01 75.0% 76.7%
3825611 185.1.1.4 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Prolamin_like 0.51 36.0 3.54e-01 78.3% 88.6%
4035993 2008.1.1.172 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26318 0.51 40.0 2.77e-01 96.7% 24.2%
D3 medium residues 229-289
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.76 54.0 4.70e-01 75.4% 89.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.29e-01 85.2% 70.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.44e-01 80.3% 84.8%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.74 58.0 4.83e-01 85.2% 96.2%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.66e-01 85.2% 83.6%
2hw6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.74 51.0 4.47e-01 72.1% 86.4%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.74 57.0 3.92e-01 85.2% 29.1%
5d9hA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 50.0 4.45e-01 72.1% 84.1%
4czuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 52.0 4.54e-01 75.4% 88.0%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.72 49.0 3.12e-01 72.1% 30.5%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.72 50.0 2.98e-01 73.8% 17.7%
4d9uA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 49.0 4.35e-01 72.1% 83.0%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.71 49.0 3.01e-01 72.1% 24.1%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 49.0 4.42e-01 72.1% 91.6%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 49.0 3.91e-01 73.8% 86.8%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.70 48.0 3.04e-01 72.1% 24.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.14e-01 80.3% 88.9%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 47.0 4.10e-01 72.1% 85.4%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 47.0 4.36e-01 72.1% 83.5%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 51.0 4.48e-01 80.3% 87.0%
1golA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 47.0 3.72e-01 72.1% 73.4%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 47.0 4.13e-01 72.1% 86.8%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 48.0 3.97e-01 73.8% 69.4%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 50.0 4.37e-01 78.7% 83.9%
3zh8C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 49.0 3.99e-01 77.0% 75.7%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 48.0 3.61e-01 77.0% 62.1%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 46.0 4.03e-01 72.1% 75.8%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 45.0 4.25e-01 72.1% 83.1%
4ks7A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 3.98e-01 73.8% 75.5%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.66 50.0 3.39e-01 83.6% 82.3%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.65 49.0 3.54e-01 82.0% 94.3%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 55.0 4.23e-01 100.0% 92.2%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 45.0 3.93e-01 72.1% 82.8%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 45.0 2.79e-01 73.8% 20.5%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.64 43.0 3.04e-01 70.5% 47.3%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 45.0 3.91e-01 73.8% 93.6%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 43.0 3.82e-01 70.5% 85.9%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 45.0 2.87e-01 73.8% 25.6%
3n9xA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 44.0 3.36e-01 73.8% 59.1%
4m69A00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.63 46.0 2.98e-01 78.7% 24.0%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 47.0 4.07e-01 82.0% 83.5%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 44.0 3.46e-01 78.7% 91.5%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 51.0 3.56e-01 93.4% 49.2%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 44.0 2.94e-01 80.3% 50.6%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.39e-01 78.7% 37.2%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 41.0 2.76e-01 75.4% 48.3%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 3.00e-01 88.5% 60.5%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.22e-01 80.3% 36.1%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 38.0 2.63e-01 73.8% 93.0%
3itjA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.30e-01 80.3% 96.0%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.55 42.0 3.29e-01 85.2% 92.3%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 43.0 3.29e-01 93.4% 78.9%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.99e-01 100.0% 91.7%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.27e-01 77.0% 92.1%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 47.0 3.17e-01 100.0% 35.8%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.14e-01 98.4% 88.4%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.52 45.0 2.98e-01 100.0% 31.6%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.79e-01 88.5% 60.3%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.05e-01 100.0% 76.9%
1nw1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.24e-01 77.0% 72.9%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.50 38.0 3.28e-01 88.5% 79.6%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.77e-01 100.0% 21.8%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.73 49.0 3.11e-01 70.5% 26.8%
3698847 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.72 49.0 3.07e-01 70.5% 26.3%
1933323 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.72 50.0 3.08e-01 73.8% 90.7%
4029208 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 49.0 2.97e-01 72.1% 23.3%
3666904 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.70 48.0 3.02e-01 72.1% 19.7%
2323841 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 47.0 2.91e-01 73.8% 21.4%
3467472 5.1.5.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.67 46.0 2.90e-01 72.1% 22.7%
3818723 5.1.8.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › FBA_3 0.66 46.0 3.28e-01 72.1% 42.9%
3378720 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.65 44.0 2.74e-01 72.1% 20.5%
4121572 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.65 44.0 2.78e-01 72.1% 22.3%
3623154 5.1.4.436 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.65 44.0 2.49e-01 72.1% 15.3%
3993098 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.65 44.0 2.58e-01 72.1% 21.5%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 3.99e-01 86.9% 47.7%
3939547 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 43.0 2.67e-01 70.5% 22.1%
3634325 5.1.4.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.63 43.0 2.74e-01 72.1% 26.3%
3239128 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 43.0 2.71e-01 72.1% 26.2%
3423257 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.63 43.0 2.69e-01 72.1% 30.8%
3224830 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 44.0 2.73e-01 78.7% 22.2%
3430645 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.61 47.0 2.95e-01 82.0% 38.0%
3740013 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.79e-01 82.0% 93.0%
3811228 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 47.0 2.99e-01 85.2% 47.7%
3369627 5.1.4.226 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.60 47.0 2.83e-01 86.9% 85.3%
3826459 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.59 45.0 2.94e-01 82.0% 37.0%
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.59 42.0 3.52e-01 77.0% 53.6%
3811378 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 44.0 2.79e-01 82.0% 35.1%
3811166 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 45.0 2.98e-01 85.2% 41.1%
3822901 5.1.3.155 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2 0.59 49.0 3.07e-01 91.8% 76.0%
3661053 5.1.5.132 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF7899 0.59 52.0 3.09e-01 100.0% 89.2%
3455400 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 46.0 2.91e-01 86.9% 93.3%
3917776 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.58 47.0 3.02e-01 90.2% 75.2%
5018282 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.14e-01 95.1% 95.0%
3166679 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 2.60e-01 78.7% 14.6%
3309970 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 45.0 2.83e-01 86.9% 91.2%
4626423 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 43.0 2.70e-01 82.0% 17.6%
3935989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 42.0 2.65e-01 82.0% 93.5%
3814061 5.1.3.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_FKB95 0.56 46.0 2.92e-01 90.2% 67.9%
None 0.56 49.0 2.75e-01 100.0% 19.9%
4223255 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.56 40.0 2.58e-01 78.7% 24.2%
3742908 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.56 42.0 3.65e-01 82.0% 92.6%
3450225 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 47.0 3.01e-01 95.1% 83.1%
3714545 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 2.95e-01 100.0% 87.3%
3938022 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.97e-01 100.0% 85.8%
4667555 5.1.3.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, SGL 0.55 44.0 2.84e-01 91.8% 82.2%
3973684 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 42.0 3.38e-01 86.9% 94.8%
3648313 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 43.0 2.72e-01 85.2% 70.2%
3853654 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.55 44.0 2.84e-01 88.5% 61.6%
4029617 5.1.11.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.55 47.0 2.85e-01 100.0% 88.9%
5078994 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.55 42.0 2.64e-01 88.5% 38.2%
3450557 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.55 43.0 2.80e-01 90.2% 93.9%
4244660 5.1.4.564 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29788 0.55 43.0 2.86e-01 90.2% 91.4%
5030522 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 39.0 2.63e-01 77.0% 33.5%
3431397 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 44.0 2.78e-01 91.8% 95.8%
3830791 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.86e-01 100.0% 91.8%
3537353 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 42.0 2.78e-01 91.8% 89.0%
3253847 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 2.69e-01 100.0% 36.7%
3582979 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.54 48.0 2.88e-01 100.0% 81.6%
3197065 5.1.4.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.54 44.0 2.93e-01 100.0% 99.3%
3465186 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.54 39.0 3.16e-01 80.3% 88.5%
3702018 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.85e-01 98.4% 42.7%
3303863 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 45.0 2.87e-01 100.0% 88.7%
3677142 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 42.0 2.72e-01 90.2% 85.0%
3371196 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 41.0 2.66e-01 90.2% 81.8%
3392759 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 2.77e-01 100.0% 88.5%
3775078 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 40.0 2.38e-01 88.5% 63.4%
3404508 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.78e-01 100.0% 38.8%
4342106 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 2.80e-01 98.4% 31.5%
4961453 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.51 44.0 2.75e-01 100.0% 84.5%
3252223 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.59e-01 95.1% 84.2%
3826919 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.62e-01 100.0% 40.5%
3827251 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 42.0 2.69e-01 98.4% 30.9%
D4 medium residues 290-348
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 4.51e-01 88.1% 67.2%
1z2zA01 3.30.2350.20 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain 0.66 52.0 3.56e-01 91.5% 43.1%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 3.51e-01 81.4% 76.9%
7qttV01 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.59 48.0 3.64e-01 93.2% 70.7%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 47.0 3.92e-01 96.6% 86.8%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.57 41.0 3.29e-01 78.0% 88.0%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.76e-01 84.7% 85.4%
4o2tA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 43.0 3.25e-01 89.8% 80.4%
1p9bA03 3.90.170.10 Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 0.55 46.0 3.48e-01 100.0% 79.9%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 3.84e-01 94.9% 92.6%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.62e-01 88.1% 84.6%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.55 45.0 4.29e-01 94.9% 89.0%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 42.0 3.41e-01 91.5% 52.7%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 3.50e-01 94.9% 82.5%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.52 36.0 2.90e-01 74.6% 94.4%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.57e-01 88.1% 96.6%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.52 40.0 3.32e-01 86.4% 70.0%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 38.0 3.52e-01 79.7% 100.0%
4melA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.72e-01 100.0% 89.4%
3n40P03 2.60.40.4310 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain B 0.51 37.0 3.82e-01 81.4% 96.4%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 37.0 3.33e-01 83.1% 76.7%
2qejD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 40.0 3.43e-01 100.0% 84.7%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.50 38.0 3.01e-01 91.5% 36.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071168 4.1.1.95 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.71 58.0 4.59e-01 88.1% 69.6%
4181687 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.71 49.0 4.05e-01 72.9% 99.0%
4601878 4.1.1.295 beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.70 57.0 4.38e-01 88.1% 61.5%
3319340 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.93e-01 74.6% 98.3%
4947000 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.69 55.0 3.76e-01 89.8% 85.5%
4934934 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.67 53.0 3.64e-01 89.8% 34.5%
4135813 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.65 51.0 3.90e-01 88.1% 82.8%
5079196 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.63 51.0 3.53e-01 91.5% 35.8%
4395813 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.63 53.0 3.63e-01 96.6% 85.9%
4950662 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.63 52.0 3.61e-01 94.9% 87.6%
4266110 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 49.0 4.60e-01 83.1% 84.3%
5048278 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.61 50.0 3.45e-01 93.2% 86.8%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.60 40.0 4.04e-01 71.2% 100.0%
3651964 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.58 52.0 4.06e-01 96.6% 93.3%
5052992 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.58 47.0 3.25e-01 94.9% 86.8%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 52.0 3.98e-01 100.0% 93.8%
3970224 109.4.1.3481 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27104, PF29489 0.57 46.0 2.97e-01 93.2% 26.5%
3722497 1.1.2.22 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.57 41.0 3.55e-01 76.3% 73.3%
4929786 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.56 47.0 3.24e-01 94.9% 85.7%
3831902 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.54 40.0 2.86e-01 84.7% 62.8%
4346976 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 42.0 3.77e-01 86.4% 100.0%
3409881 219.1.1.81 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD 0.52 41.0 2.72e-01 100.0% 62.1%
3990802 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.51 38.0 3.33e-01 81.4% 91.6%