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CP011103.1__AQY52667.1__UE46_p05410__00056

Bact-Vir

CP011103.1__AQY52667.1__UE46_p05410__00056

Identity

Accession:
CP011103 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_LWP01

TaxID: 1633782

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92
PDB
Domain cluster: rep: ON210835.1__URO01824.1__268TH002_29__00029__D38-107
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.86 45.0 5.95e-01 90.0% 94.0%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 39.0 5.34e-01 85.6% 91.3%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 51.0 6.00e-01 91.1% 91.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 48.0 5.41e-01 92.2% 80.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 49.0 5.80e-01 96.7% 95.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.72e-01 95.6% 84.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 41.0 5.30e-01 90.0% 97.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 47.0 5.36e-01 95.6% 84.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 44.0 5.40e-01 82.2% 94.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 44.0 5.30e-01 82.2% 89.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.60e-01 98.9% 88.6%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 5.62e-01 88.9% 98.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 46.0 5.55e-01 96.7% 96.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 45.0 5.55e-01 96.7% 100.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.73 42.0 4.80e-01 85.6% 77.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.66e-01 100.0% 85.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 5.12e-01 91.1% 91.5%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 47.0 4.12e-01 95.6% 46.6%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.65e-01 93.3% 76.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 5.17e-01 97.8% 96.8%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 5.06e-01 97.8% 87.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 44.0 4.99e-01 85.6% 88.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 43.0 5.13e-01 81.1% 100.0%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 56.0 3.92e-01 94.4% 31.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.94e-01 84.4% 95.2%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 55.0 4.28e-01 97.8% 45.9%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.63 57.0 5.25e-01 100.0% 80.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.55e-01 88.9% 80.8%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 5.29e-01 98.9% 96.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.61e-01 84.4% 90.9%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.84e-01 87.8% 97.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.68e-01 80.0% 91.4%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.58e-01 81.1% 95.3%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.60 51.0 3.72e-01 98.9% 34.1%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 48.0 4.30e-01 100.0% 62.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.57e-01 85.6% 92.6%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.54 33.0 3.25e-01 100.0% 51.9%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 4.18e-01 94.4% 76.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.55e-01 76.7% 60.2%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 4.19e-01 73.3% 95.5%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.88e-01 72.2% 87.5%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 45.0 3.70e-01 100.0% 56.4%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 37.0 2.80e-01 78.9% 82.9%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.35e-01 96.7% 74.5%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.92 50.0 6.37e-01 85.6% 89.1%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.89 63.0 7.30e-01 94.4% 100.0%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 53.0 6.70e-01 92.2% 100.0%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 59.0 6.86e-01 98.9% 96.9%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 50.0 6.32e-01 97.8% 100.0%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.83 54.0 6.36e-01 96.7% 92.3%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 44.0 5.59e-01 80.0% 87.3%
4998113 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.82 42.0 5.74e-01 77.8% 100.0%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.81 50.0 6.08e-01 92.2% 93.3%
3737903 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.81 49.0 6.17e-01 96.7% 100.0%
858452 4.1.1.476 ↗ beta barrels › SH3 › SH3 › SH3 › PF30873 0.81 52.0 5.08e-01 94.4% 60.4%
185635 4.1.1.391 ↗ beta barrels › SH3 › SH3 › SH3 › FDF, PF30873 0.81 51.0 4.55e-01 91.1% 47.1%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 51.0 5.36e-01 100.0% 71.2%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 54.0 5.66e-01 94.4% 74.7%
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 47.0 5.88e-01 91.1% 98.1%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.80 50.0 5.81e-01 93.3% 87.7%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 44.0 5.50e-01 93.3% 89.1%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.80 45.0 5.68e-01 81.1% 92.7%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.80 48.0 5.62e-01 95.6% 84.6%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.79 52.0 4.92e-01 100.0% 57.1%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.79 44.0 4.59e-01 95.6% 58.8%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.79 45.0 5.76e-01 82.2% 98.1%
3421158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 48.0 5.78e-01 91.1% 93.3%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.78 47.0 2.96e-01 92.2% 12.1%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.78 45.0 5.68e-01 82.2% 98.1%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.77 51.0 5.89e-01 100.0% 92.4%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 40.0 4.53e-01 87.8% 64.8%
3834390 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 44.0 5.52e-01 85.6% 100.0%
3475462 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.77 49.0 5.07e-01 93.3% 68.2%
3329059 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 43.0 5.49e-01 83.3% 100.0%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 47.0 4.90e-01 92.2% 65.9%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 47.0 5.73e-01 92.2% 100.0%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.77 54.0 5.83e-01 95.6% 86.7%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.76 51.0 5.59e-01 96.7% 82.7%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.76 44.0 5.49e-01 82.2% 94.5%
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.76 46.0 5.71e-01 91.1% 100.0%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 48.0 5.81e-01 96.7% 98.3%
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 42.0 4.46e-01 95.6% 62.5%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.39e-01 98.9% 82.7%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.40e-01 98.9% 82.7%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.80e-01 97.8% 98.5%
4966163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 46.0 4.95e-01 95.6% 74.7%
3741020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.39e-01 97.8% 87.1%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.73 51.0 5.62e-01 100.0% 90.3%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.37e-01 98.9% 82.5%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 5.06e-01 98.9% 84.6%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.72 49.0 5.31e-01 98.9% 84.0%
3388070 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.72 44.0 5.29e-01 94.4% 93.3%
4238582 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.71 44.0 5.23e-01 93.3% 93.3%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 47.0 5.15e-01 93.3% 81.3%
2641775 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.71 50.0 4.37e-01 97.8% 49.3%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.71 47.0 5.12e-01 100.0% 82.7%
1005326 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.70 43.0 5.03e-01 93.3% 87.5%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 4.35e-01 94.4% 58.0%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.02e-01 98.9% 78.8%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.70 48.0 5.03e-01 98.9% 78.8%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.47e-01 100.0% 87.1%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.69 48.0 5.27e-01 100.0% 86.7%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 46.0 5.03e-01 87.8% 82.7%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 5.19e-01 98.9% 90.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 43.0 5.13e-01 85.6% 95.0%
4003015 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.68 44.0 5.30e-01 83.3% 100.0%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.04e-01 88.9% 87.1%
3880325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 42.0 4.77e-01 83.3% 81.4%
3180573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.38e-01 95.6% 81.1%
2427475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.95e-01 97.8% 88.1%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 47.0 5.08e-01 95.6% 85.3%
4213135 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.68 48.0 4.28e-01 97.8% 53.2%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 52.0 5.65e-01 95.6% 97.3%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.67 38.0 4.84e-01 88.9% 100.0%
2127495 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.67 48.0 3.93e-01 97.8% 41.6%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 4.66e-01 85.6% 78.7%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 44.0 4.59e-01 91.1% 72.9%
3487837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 3.93e-01 98.9% 37.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 40.0 4.37e-01 88.9% 73.3%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 42.0 4.59e-01 100.0% 78.7%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.65 41.0 4.45e-01 92.2% 76.0%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 43.0 4.81e-01 83.3% 87.1%
3643302 219.1.1.78 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 0.65 56.0 4.23e-01 95.6% 42.7%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.64 47.0 5.31e-01 83.3% 98.6%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.37e-01 98.9% 63.6%
3475807 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 49.0 5.19e-01 88.9% 93.8%
4940710 3174.2.1.0 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.62 43.0 4.91e-01 92.2% 98.5%
1442407 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.61 49.0 3.84e-01 98.9% 41.6%
3500406 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 55.0 3.63e-01 100.0% 27.8%
3626277 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 44.0 4.36e-01 84.4% 72.6%
3580370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.22e-01 94.4% 62.4%
3213114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.45e-01 85.6% 80.0%
4096587 3174.2.1.2 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › OrtA 0.57 42.0 4.20e-01 91.1% 76.7%
3702177 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.98e-01 98.9% 93.0%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 42.0 4.58e-01 83.3% 94.7%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 52.0 4.70e-01 100.0% 83.3%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.38e-01 87.8% 82.2%
3574854 375.1.1.267 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10, zf-CCCH_Mcm10 0.53 38.0 3.94e-01 78.9% 80.0%
3256547 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.45e-01 76.7% 66.0%