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CP017905.1__ARP21977.1__K05K4_52750__00033
Bact-VirCP017905.1__ARP21977.1__K05K4_52750__00033
Identity
- Accession:
- CP017905 ↗
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Taxonomy
TaxID: 1912326
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-80
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.79 | 53.0 | 5.17e-01 | 87.0% | 64.6% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.79 | 40.0 | 3.24e-01 | 77.9% | 28.1% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 44.0 | 4.18e-01 | 80.5% | 48.4% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.72 | 41.0 | 4.24e-01 | 89.6% | 60.3% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 58.0 | 5.06e-01 | 88.3% | 83.9% |
| 1u5hA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.70 | 48.0 | 3.46e-01 | 72.7% | 28.3% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 57.0 | 5.14e-01 | 90.9% | 93.2% |
| 1nktA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 41.0 | 2.77e-01 | 83.1% | 16.5% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.66 | 47.0 | 3.30e-01 | 75.3% | 41.5% |
| 2ve3B00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 55.0 | 3.43e-01 | 97.4% | 40.3% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 54.0 | 4.91e-01 | 94.8% | 71.6% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 42.0 | 4.38e-01 | 81.8% | 75.0% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 46.0 | 3.87e-01 | 79.2% | 63.8% |
| 3euhC02 | 1.10.10.2260 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain | 0.61 | 43.0 | 3.81e-01 | 72.7% | 73.1% |
| 1t82A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 46.0 | 3.72e-01 | 85.7% | 43.0% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.61 | 50.0 | 4.38e-01 | 90.9% | 69.2% |
| 4jgwA02 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.59 | 44.0 | 3.11e-01 | 85.7% | 25.8% |
| 4zo4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 41.0 | 3.09e-01 | 75.3% | 34.8% |
| 4r2fA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 42.0 | 3.13e-01 | 76.6% | 39.7% |
| 1f0lA02 | 1.10.490.40 | Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain | 0.58 | 45.0 | 3.45e-01 | 84.4% | 54.8% |
| 3c1dB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 4.27e-01 | 71.4% | 93.5% |
| 2qm1A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 42.0 | 3.26e-01 | 77.9% | 50.3% |
| 1d5aA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 44.0 | 3.21e-01 | 85.7% | 29.5% |
| 4b8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.52e-01 | 79.2% | 65.7% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.57 | 44.0 | 3.66e-01 | 84.4% | 97.2% |
| 1bvyB00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 48.0 | 2.98e-01 | 92.2% | 48.2% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 39.0 | 3.35e-01 | 81.8% | 45.4% |
| 1uw4B00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 48.0 | 3.38e-01 | 96.1% | 63.7% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 38.0 | 2.56e-01 | 77.9% | 21.3% |
| 3bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.22e-01 | 72.7% | 48.9% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.77e-01 | 76.6% | 64.2% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 40.0 | 3.73e-01 | 84.4% | 95.9% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 36.0 | 2.52e-01 | 76.6% | 22.1% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3213055 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.72 | 52.0 | 3.43e-01 | 77.9% | 49.7% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.70 | 59.0 | 4.63e-01 | 89.6% | 72.7% |
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.69 | 55.0 | 4.28e-01 | 85.7% | 42.4% |
| 3787585 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.68 | 58.0 | 5.16e-01 | 90.9% | 66.7% |
| 3475698 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 58.0 | 4.66e-01 | 100.0% | 50.0% |
| 4023271 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.66 | 56.0 | 3.97e-01 | 92.2% | 58.7% |
| 3938247 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.66 | 53.0 | 3.88e-01 | 87.0% | 36.2% |
| 3781699 | 622.5.1.1 ↗ | alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 › Nas2_N | 0.66 | 59.0 | 5.19e-01 | 100.0% | 90.4% |
| 3193539 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.66 | 57.0 | 4.06e-01 | 93.5% | 56.7% |
| 3974489 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 48.0 | 4.01e-01 | 77.9% | 60.0% |
| 3211334 | 3291.1.1.203 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Myelin_PLP | 0.66 | 58.0 | 4.34e-01 | 96.1% | 97.8% |
| 4162329 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.65 | 55.0 | 3.97e-01 | 92.2% | 54.4% |
| 4378513 | 3615.1.1.24 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CDK5RAP3 | 0.65 | 52.0 | 3.95e-01 | 88.3% | 37.7% |
| 5072419 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.65 | 41.0 | 4.83e-01 | 76.6% | 100.0% |
| 3588896 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.65 | 48.0 | 3.29e-01 | 79.2% | 95.4% |
| 5001690 | 3276.1.1.0 ↗ | alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor | 0.64 | 48.0 | 5.06e-01 | 81.8% | 91.4% |
| 4021693 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.62 | 48.0 | 4.06e-01 | 83.1% | 94.6% |
| 4994469 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.62 | 54.0 | 4.00e-01 | 92.2% | 44.4% |
| 3533348 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.62 | 49.0 | 4.96e-01 | 84.4% | 88.0% |
| 4028993 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.62 | 48.0 | 4.15e-01 | 81.8% | 56.5% |
| 4417099 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.62 | 55.0 | 5.02e-01 | 98.7% | 75.0% |
| 4490768 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 52.0 | 2.85e-01 | 92.2% | 55.2% |
| 3532105 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.61 | 43.0 | 3.75e-01 | 75.3% | 70.4% |
| 4885968 | 2008.1.1.203 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase, AAA_19, UvrD_C | 0.61 | 52.0 | 2.92e-01 | 93.5% | 69.2% |
| 4840 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.60 | 45.0 | 3.68e-01 | 79.2% | 97.9% |
| 5081088 | 101.1.2.932 ↗ | alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc | 0.60 | 42.0 | 4.13e-01 | 76.6% | 67.5% |
| 3933613 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.59 | 48.0 | 3.84e-01 | 90.9% | 81.2% |
| 3665032 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.58 | 42.0 | 3.00e-01 | 77.9% | 25.5% |
| 4575832 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.57 | 41.0 | 3.01e-01 | 89.6% | 29.2% |
| None | — | 0.56 | 42.0 | 2.72e-01 | 79.2% | 71.8% | |
| 3681103 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.56 | 43.0 | 3.03e-01 | 81.8% | 76.4% |
| 4176207 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.29e-01 | 76.6% | 39.3% |
| 4011318 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 37.0 | 3.68e-01 | 83.1% | 66.3% |
| 3904184 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.55 | 47.0 | 2.91e-01 | 93.5% | 22.3% |
| 4502969 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.54 | 40.0 | 2.90e-01 | 87.0% | 29.3% |
| 3695897 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.53 | 46.0 | 2.78e-01 | 93.5% | 90.8% |
| 2545638 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 41.0 | 3.33e-01 | 90.9% | 43.0% |
| 4361771 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.53 | 43.0 | 3.35e-01 | 94.8% | 86.8% |
| 3828954 | 3324.1.1.1 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › MTR4_beta-barrel | 0.51 | 39.0 | 3.46e-01 | 81.8% | 90.0% |
| 3472555 | 109.6.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF | 0.51 | 43.0 | 2.94e-01 | 93.5% | 28.9% |