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CP025712.1__AUO37543.1__YDC107_5426__00066

Bact-Vir

CP025712.1__AUO37543.1__YDC107_5426__00066

Identity

Accession:
CP025712 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ravinvirus› Escherichia_phage_YDC107_1

TaxID: 2056767

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.78 62.0 5.69e-01 100.0% 65.5%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.77 70.0 6.21e-01 100.0% 94.2%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.76 67.0 6.05e-01 98.8% 73.1%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.75 68.0 6.49e-01 100.0% 94.1%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.74 65.0 5.79e-01 98.8% 71.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.48e-01 72.1% 70.4%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 54.0 4.59e-01 86.0% 86.5%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.85e-01 73.3% 86.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.44e-01 91.9% 90.2%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 53.0 4.76e-01 91.9% 81.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 5.10e-01 80.2% 100.0%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 51.0 4.54e-01 86.0% 75.6%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 39.0 4.70e-01 80.2% 100.0%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 51.0 4.49e-01 87.2% 79.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 5.08e-01 90.7% 97.3%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.61 43.0 2.79e-01 74.4% 89.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.96e-01 83.7% 98.6%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.87e-01 77.9% 100.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.83e-01 90.7% 100.0%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.53 38.0 3.04e-01 79.1% 90.8%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.12e-01 84.9% 85.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.75e-01 93.0% 93.4%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 40.0 3.82e-01 87.2% 100.0%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.76e-01 93.0% 96.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.86 60.0 6.81e-01 70.9% 100.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 57.0 6.30e-01 70.9% 100.0%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.82 58.0 6.33e-01 72.1% 100.0%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 57.0 6.05e-01 72.1% 100.0%
4157193 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 55.0 6.07e-01 72.1% 100.0%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 54.0 5.65e-01 72.1% 87.5%
4493478 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.78 69.0 6.03e-01 98.8% 68.5%
5010546 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.77 69.0 6.32e-01 98.8% 92.7%
4952498 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.75 65.0 6.22e-01 94.2% 97.0%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 57.0 6.29e-01 95.3% 100.0%
3996679 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.75 47.0 5.64e-01 91.9% 100.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 3.75e-01 72.1% 30.2%
1186020 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.72 66.0 5.53e-01 100.0% 65.5%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.71 47.0 5.48e-01 89.5% 100.0%
3969500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.75e-01 70.9% 83.2%
4459365 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 57.0 5.94e-01 94.2% 91.3%
2570822 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.71 56.0 4.74e-01 86.0% 84.1%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.71 47.0 5.48e-01 91.9% 100.0%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.01e-01 72.1% 81.2%
3970579 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.70 56.0 4.66e-01 86.0% 85.3%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.70 46.0 5.36e-01 88.4% 98.3%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 46.0 4.90e-01 70.9% 77.3%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 47.0 5.36e-01 72.1% 100.0%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 40.0 5.02e-01 76.7% 100.0%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 46.0 4.79e-01 72.1% 75.0%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 39.0 4.86e-01 77.9% 100.0%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.67 46.0 4.73e-01 70.9% 82.5%
3407089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 49.0 5.11e-01 87.2% 90.0%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 39.0 4.64e-01 81.4% 98.2%
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 52.0 5.29e-01 93.0% 92.9%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.61 52.0 4.70e-01 93.0% 99.1%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 43.0 2.41e-01 81.4% 6.1%
3508415 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 53.0 4.62e-01 96.5% 83.1%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.60 51.0 4.21e-01 93.0% 71.6%
3768094 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 51.0 4.81e-01 93.0% 76.2%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 42.0 3.35e-01 81.4% 36.0%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 39.0 4.00e-01 76.7% 69.9%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 40.0 4.35e-01 80.2% 85.9%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.57 39.0 3.94e-01 70.9% 72.9%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.56 46.0 3.98e-01 89.5% 97.8%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 41.0 3.98e-01 79.1% 82.0%
1408049 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.55 46.0 3.95e-01 90.7% 88.2%
None — 0.54 41.0 2.24e-01 80.2% 6.6%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 2.21e-01 80.2% 5.5%
2363 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.53 38.0 3.04e-01 79.1% 90.8%