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CP025713.1__AUO37581.1__YDC107_5464__00037
Bact-VirCP025713.1__AUO37581.1__YDC107_5464__00037
Identity
- Accession:
- CP025713 ↗
- Kingdom:
- phage
Quality
68.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-66
D2
high
residues 70-127
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06992.17 best | Phage_lambda_P | 39.4 | 7.60e-10 | 100.0% | 34.0% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k1zA02 | 1.10.150.720 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase | 0.64 | 44.0 | 3.88e-01 | 75.9% | 50.0% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.63 | 46.0 | 3.93e-01 | 77.6% | 58.5% |
| 2p67A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.62 | 39.0 | 3.83e-01 | 89.7% | 56.9% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.61 | 40.0 | 3.86e-01 | 91.4% | 58.5% |
| 1pzxB01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.60 | 47.0 | 3.74e-01 | 87.9% | 93.4% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.59 | 45.0 | 4.06e-01 | 86.2% | 60.3% |
| 2g3bA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 44.0 | 3.23e-01 | 84.5% | 65.8% |
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 46.0 | 3.99e-01 | 96.6% | 57.5% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.57 | 42.0 | 3.15e-01 | 82.8% | 28.9% |
| 1h3lB00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 46.0 | 4.15e-01 | 87.9% | 66.7% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 40.0 | 3.93e-01 | 79.3% | 74.6% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.56 | 45.0 | 3.52e-01 | 87.9% | 46.7% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 48.0 | 3.17e-01 | 100.0% | 27.3% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.54 | 39.0 | 3.54e-01 | 86.2% | 52.9% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.54 | 40.0 | 3.71e-01 | 86.2% | 62.7% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 42.0 | 3.88e-01 | 86.2% | 70.3% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.53 | 43.0 | 3.34e-01 | 100.0% | 37.8% |
| 5y58A01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.53 | 43.0 | 2.95e-01 | 91.4% | 43.9% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.53 | 46.0 | 2.92e-01 | 100.0% | 47.2% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.53 | 41.0 | 3.35e-01 | 86.2% | 73.7% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 43.0 | 3.90e-01 | 93.1% | 68.7% |
| 2wwwA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.52 | 34.0 | 3.33e-01 | 98.3% | 58.5% |
| 3hibA01 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.51 | 37.0 | 3.10e-01 | 81.0% | 61.9% |
| 2qgnA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.51 | 42.0 | 3.88e-01 | 100.0% | 69.5% |
| 3qwlA02 | 1.10.8.680 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 | 0.51 | 44.0 | 4.02e-01 | 98.3% | 89.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4122775 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.71 | 44.0 | 4.91e-01 | 91.4% | 82.2% |
| 4933747 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.64 | 54.0 | 4.76e-01 | 93.1% | 65.9% |
| 4943116 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 54.0 | 4.85e-01 | 94.8% | 68.7% |
| 3958995 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 45.0 | 4.42e-01 | 100.0% | 70.3% |
| 3965865 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.61 | 45.0 | 3.85e-01 | 89.7% | 48.4% |
| 3724892 | 2004.5.1.11 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › SPA | 0.60 | 45.0 | 2.94e-01 | 89.7% | 18.1% |
| 5003416 | 3487.1.1.0 ↗ | a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 | 0.60 | 52.0 | 4.23e-01 | 100.0% | 73.7% |
| 4474891 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.60 | 53.0 | 3.37e-01 | 100.0% | 19.7% |
| 5018197 | 3487.1.1.1 ↗ | a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › M1E1E6-like | 0.59 | 51.0 | 4.15e-01 | 100.0% | 73.0% |
| 3738995 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.59 | 41.0 | 4.01e-01 | 81.0% | 66.2% |
| 4999162 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.59 | 45.0 | 4.36e-01 | 94.8% | 73.8% |
| 4945089 | 3487.1.1.0 ↗ | a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 | 0.58 | 50.0 | 4.12e-01 | 100.0% | 76.4% |
| 1117796 | 102.1.3.7 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5 | 0.58 | 50.0 | 3.71e-01 | 100.0% | 91.3% |
| 4034143 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.57 | 38.0 | 3.97e-01 | 70.7% | 80.0% |
| 5002576 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.57 | 48.0 | 4.39e-01 | 100.0% | 98.8% |
| 3221554 | 4218.1.1.1 ↗ | alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH | 0.56 | 45.0 | 3.87e-01 | 91.4% | 91.6% |
| 3742359 | 3361.1.1.1 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head | 0.55 | 41.0 | 3.53e-01 | 81.0% | 84.2% |
| 3892232 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.53 | 42.0 | 3.55e-01 | 89.7% | 51.4% |
| 3459756 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.52 | 41.0 | 3.04e-01 | 87.9% | 31.9% |
| 3535986 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.52 | 42.0 | 3.79e-01 | 89.7% | 72.5% |
| 3772121 | 632.7.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever | 0.52 | 41.0 | 3.61e-01 | 89.7% | 66.7% |
| 3490234 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.50 | 36.0 | 2.94e-01 | 77.6% | 53.3% |