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CP103806.1__UWD50695.1__NYR90_20060__00004

Bact-Vir

CP103806.1__UWD50695.1__NYR90_20060__00004

Identity

Accession:
CP103806 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-118
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 50.0 4.87e-01 71.4% 71.6%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 51.0 4.95e-01 72.5% 68.0%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.71 57.0 5.16e-01 85.7% 99.2%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.69 48.0 4.82e-01 71.4% 100.0%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 48.0 4.82e-01 71.4% 72.5%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.69 57.0 3.98e-01 93.4% 77.4%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 44.0 4.19e-01 95.6% 56.7%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.68 44.0 4.12e-01 96.7% 53.6%
1r3bA01 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.67 51.0 4.08e-01 80.2% 76.4%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.66 57.0 4.99e-01 96.7% 97.9%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.66 55.0 4.90e-01 91.2% 100.0%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.66 54.0 4.62e-01 90.1% 92.6%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 44.0 4.34e-01 96.7% 65.3%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.65 45.0 4.25e-01 98.9% 59.6%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.65 44.0 4.58e-01 98.9% 75.3%
5gj7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 46.0 3.88e-01 100.0% 44.4%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.65 48.0 3.87e-01 86.8% 42.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 53.0 4.83e-01 86.8% 79.5%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 50.0 3.92e-01 81.3% 60.9%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.64 43.0 4.58e-01 83.5% 79.7%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.64 56.0 4.57e-01 95.6% 96.3%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 42.0 4.32e-01 96.7% 70.9%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.64 46.0 3.65e-01 100.0% 37.5%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.63 45.0 3.80e-01 75.8% 45.7%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.62 51.0 4.56e-01 89.0% 89.0%
4aybA07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.62 47.0 4.36e-01 82.4% 78.3%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.62 53.0 4.49e-01 96.7% 82.2%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 47.0 4.50e-01 91.2% 70.9%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 49.0 4.63e-01 84.6% 78.0%
2c2uA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 44.0 3.56e-01 75.8% 75.8%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 42.0 4.56e-01 73.6% 85.3%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 47.0 4.47e-01 93.4% 70.1%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.61 49.0 4.36e-01 86.8% 95.3%
2cz2A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.43e-01 89.0% 78.6%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.59 51.0 4.53e-01 95.6% 88.0%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 40.0 3.41e-01 91.2% 42.0%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 4.33e-01 91.2% 72.3%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 34.0 3.60e-01 73.6% 66.7%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 43.0 4.22e-01 89.0% 72.3%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.57 43.0 4.26e-01 91.2% 75.3%
3fr3B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 4.13e-01 86.8% 87.0%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 42.0 3.65e-01 85.7% 53.2%
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 4.32e-01 94.5% 94.5%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 46.0 4.51e-01 100.0% 89.0%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.52 46.0 3.64e-01 96.7% 95.6%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.52 45.0 3.80e-01 98.9% 77.5%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 42.0 3.38e-01 91.2% 58.5%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.51 45.0 3.68e-01 94.5% 59.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276887 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 48.0 4.46e-01 86.8% 53.0%
5062266 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.72 57.0 4.80e-01 84.6% 96.0%
3711833 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.70 48.0 3.91e-01 100.0% 38.8%
3285767 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.70 42.0 3.98e-01 84.6% 50.5%
3731023 3567.1.1.23 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › DUF2985 0.69 62.0 4.60e-01 100.0% 91.9%
5070237 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.68 51.0 5.18e-01 79.1% 87.8%
3481122 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 44.0 4.26e-01 96.7% 60.0%
3496462 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 44.0 4.27e-01 90.1% 60.0%
3697586 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.67 47.0 3.87e-01 100.0% 40.0%
3705329 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 45.0 4.42e-01 100.0% 64.0%
4883406 622.4.1.1 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 0.66 49.0 4.48e-01 98.9% 60.3%
3270160 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.66 46.0 4.52e-01 100.0% 67.0%
3432743 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.66 47.0 4.58e-01 74.7% 89.0%
3889547 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 39.0 3.09e-01 100.0% 28.4%
4030256 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.65 47.0 4.70e-01 85.7% 72.6%
3625675 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 50.0 4.41e-01 89.0% 58.4%
4956683 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 49.0 4.79e-01 86.8% 73.0%
3580347 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 47.0 4.50e-01 98.9% 66.7%
4033482 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 43.0 4.37e-01 100.0% 68.9%
3643042 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 58.0 4.47e-01 100.0% 81.5%
4085606 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.64 45.0 4.22e-01 100.0% 60.0%
4029511 3914.1.1.7 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › RSN1_7TM 0.64 51.0 3.23e-01 83.5% 47.7%
3238213 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 52.0 4.83e-01 85.7% 84.5%
4097040 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.63 42.0 4.12e-01 100.0% 62.0%
3644241 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 53.0 4.66e-01 87.9% 76.0%
3600074 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.63 54.0 4.72e-01 96.7% 97.9%
3471924 603.1.1.105 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.63 42.0 3.99e-01 100.0% 59.0%
4261872 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.63 48.0 4.90e-01 89.0% 82.2%
3755128 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.62 46.0 4.54e-01 96.7% 73.7%
4141009 604.12.1.115 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF26206 0.62 45.0 4.11e-01 75.8% 70.8%
3613749 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 55.0 4.45e-01 98.9% 80.0%
3441715 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 47.0 4.41e-01 80.2% 89.1%
3635930 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 44.0 3.70e-01 75.8% 60.0%
3705127 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.61 43.0 4.29e-01 82.4% 70.5%
4944639 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 48.0 4.75e-01 87.9% 80.0%
3249527 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.60 52.0 4.62e-01 96.7% 99.3%
3167019 1075.4.1.8 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Glucan_synthase 0.60 49.0 3.47e-01 86.8% 31.7%
3186931 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.60 53.0 4.24e-01 100.0% 94.2%
3959716 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.59 42.0 3.99e-01 73.6% 93.6%
3634960 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.58 42.0 3.92e-01 84.6% 61.8%
4943557 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.58 42.0 3.71e-01 92.3% 52.3%
3605674 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 44.0 3.32e-01 81.3% 44.5%
3884349 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 50.0 4.59e-01 100.0% 95.2%
5051683 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.57 43.0 4.06e-01 80.2% 87.3%
3583890 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.57 45.0 3.83e-01 87.9% 53.1%
3917171 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 48.0 4.02e-01 100.0% 85.7%
3830963 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.56 46.0 4.17e-01 87.9% 70.0%
3713792 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 39.0 3.77e-01 86.8% 64.8%
1503841 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.55 42.0 3.65e-01 85.7% 53.2%
3932407 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 47.0 3.50e-01 97.8% 52.2%
3514685 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 44.0 3.50e-01 89.0% 47.8%
3723690 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 42.0 3.80e-01 85.7% 76.0%
3884746 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 45.0 3.94e-01 94.5% 63.0%
3639542 109.4.1.147 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind 0.53 42.0 2.61e-01 86.8% 15.0%
3267295 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 45.0 3.51e-01 100.0% 75.7%