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CP103806.1__UWD50716.1__NYR90_20175__00027
Bact-VirCP103806.1__UWD50716.1__NYR90_20175__00027
Identity
- Accession:
- CP103806 ↗
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Leicestervirus›
Clostridioides_phage_Hain-Saunders-2022a
TaxID: 2998861
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-60
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2debA01 | 1.20.1280.180 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.74 | 58.0 | 5.70e-01 | 90.9% | 98.0% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 61.0 | 4.62e-01 | 100.0% | 90.4% |
| 1crnA00 | 3.30.1350.10 | Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like | 0.71 | 52.0 | 5.22e-01 | 93.2% | 80.4% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 53.0 | 4.69e-01 | 97.7% | 88.6% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 53.0 | 3.87e-01 | 100.0% | 59.0% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.63 | 47.0 | 4.17e-01 | 86.4% | 85.7% |
| 2qhoD00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 41.0 | 4.01e-01 | 75.0% | 61.2% |
| 3dzaA02 | 6.10.250.2140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 48.0 | 4.46e-01 | 97.7% | 93.5% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.59 | 48.0 | 3.30e-01 | 100.0% | 43.4% |
| 4z9mB02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.59 | 48.0 | 3.23e-01 | 100.0% | 79.3% |
| 5o3zL00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 41.0 | 2.61e-01 | 81.8% | 44.5% |
| 1k2wA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 40.0 | 2.57e-01 | 81.8% | 44.5% |
| 1wwzA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 43.0 | 3.10e-01 | 95.5% | 52.2% |
| 6ioyC02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 43.0 | 2.84e-01 | 90.9% | 80.6% |
| 1o5iA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 38.0 | 2.47e-01 | 86.4% | 35.0% |
| 2i00C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 37.0 | 2.63e-01 | 79.5% | 31.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954308 | 210.1.1.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 | 0.75 | 62.0 | 4.01e-01 | 100.0% | 20.0% |
| 4966656 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.75 | 63.0 | 5.47e-01 | 97.7% | 92.9% |
| 5017610 | 210.1.1.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 | 0.74 | 61.0 | 3.98e-01 | 100.0% | 21.0% |
| 997935 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.74 | 62.0 | 3.61e-01 | 100.0% | 41.8% |
| 4950432 | 210.1.1.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 | 0.72 | 58.0 | 3.91e-01 | 100.0% | 22.6% |
| 4672450 | 210.1.1.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 | 0.72 | 58.0 | 3.82e-01 | 100.0% | 21.0% |
| 7967 | 365.1.1.1 ↗ | few secondary structure elements › Crambin-like › Crambin-like › Crambin-like › Thionin | 0.71 | 52.0 | 5.19e-01 | 93.2% | 80.4% |
| 3970706 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.70 | 56.0 | 4.17e-01 | 100.0% | 90.0% |
| 3285266 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.68 | 59.0 | 5.36e-01 | 100.0% | 91.7% |
| 4135802 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.68 | 58.0 | 5.31e-01 | 100.0% | 95.0% |
| 88058 | 365.1.1.1 ↗ | few secondary structure elements › Crambin-like › Crambin-like › Crambin-like › Thionin | 0.67 | 48.0 | 4.77e-01 | 90.9% | 78.3% |
| 5038997 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.66 | 56.0 | 5.00e-01 | 100.0% | 89.2% |
| 5025013 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.65 | 55.0 | 5.22e-01 | 100.0% | 94.5% |
| 4078674 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.65 | 48.0 | 4.47e-01 | 84.1% | 98.3% |
| 5023993 | 210.1.1.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 | 0.58 | 45.0 | 3.07e-01 | 100.0% | 20.9% |
| 3507298 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 47.0 | 3.22e-01 | 100.0% | 99.0% |
| 4494622 | 206.1.1.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF | 0.56 | 39.0 | 2.34e-01 | 77.3% | 15.0% |
| 3699596 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 43.0 | 3.05e-01 | 100.0% | 84.9% |
| 3482157 | 5.1.11.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 | 0.55 | 37.0 | 2.14e-01 | 72.7% | 6.5% |
| 5011531 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.55 | 42.0 | 3.58e-01 | 86.4% | 89.3% |
| 4958990 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.55 | 42.0 | 3.87e-01 | 93.2% | 98.5% |
| None | — | 0.53 | 41.0 | 2.70e-01 | 100.0% | 18.0% | |
| 5049099 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 42.0 | 3.06e-01 | 100.0% | 97.4% |
| 4946578 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.51 | 39.0 | 2.98e-01 | 88.6% | 50.0% |