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CPXV127_protein
Euk-VirCowpox_virus
CPXV127_protein__NP_619911__Cowpox_virus__10243
Identity
- Accession:
- NP_619911 ↗
- Protein ID:
- CPXV127_protein
- Kingdom:
- euk
Quality
88.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Orthopoxvirus›
Cowpox_virus
TaxID: 10243
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-67_122-219
Domain cluster:
rep: CAKLQF020000005.1__CAH1078277.1__SAMEA5780031_01286__00128__D7-154
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00293.35 best | NUDIX | 32.1 | 1.50e-07 | 76.8% | 81.3% |
| PF08476.16 | VD10_N | 58.0 | 8.10e-16 | 19.9% | 69.8% |
D2
high
residues 70-107
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l7kA00 | 1.10.10.1850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like | 0.79 | 66.0 | 5.24e-01 | 94.7% | 47.4% |
| 3vurA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 54.0 | 3.92e-01 | 86.8% | 62.8% |
| 5my3A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.68 | 58.0 | 3.64e-01 | 100.0% | 43.2% |
| 8fefH01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 55.0 | 3.31e-01 | 100.0% | 26.5% |
| 1f7cA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.65 | 52.0 | 3.44e-01 | 100.0% | 49.5% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.64 | 49.0 | 4.61e-01 | 100.0% | 83.6% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.63 | 47.0 | 3.46e-01 | 84.2% | 74.5% |
| 3kuqA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.59 | 45.0 | 3.04e-01 | 100.0% | 46.4% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.56 | 38.0 | 3.56e-01 | 73.7% | 53.8% |
| 2i7xA02 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 2.78e-01 | 100.0% | 29.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954945 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.72 | 58.0 | 4.37e-01 | 89.5% | 44.4% |
| 3934950 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.71 | 62.0 | 3.87e-01 | 100.0% | 44.5% |
| 3388837 | 109.4.1.129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C | 0.68 | 54.0 | 3.79e-01 | 100.0% | 34.9% |
| 3655489 | 109.4.1.775 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 52.0 | 3.30e-01 | 100.0% | 20.4% |
| 3742606 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.65 | 52.0 | 3.41e-01 | 100.0% | 47.7% |
| 2897635 | 3317.3.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 | 0.64 | 49.0 | 3.75e-01 | 100.0% | 33.9% |
| 4281897 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.64 | 51.0 | 3.84e-01 | 94.7% | 45.0% |
| 3267703 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.63 | 53.0 | 4.06e-01 | 100.0% | 45.3% |
| 3619171 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.59 | 45.0 | 2.96e-01 | 100.0% | 50.9% |
| 3631439 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.53 | 41.0 | 3.18e-01 | 100.0% | 34.7% |