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CP

Euk-Vir

Caladenia_virus_A

CP__YP_006666647__Caladenia_virus_A__1198147

Identity

Accession:: YP_006666647 ↗
Protein ID:: CP
Kingdom:: euk

Quality

70.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Poacevirus› Caladenia_virus_A

TaxID: 1198147

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 85-176

PDB

Domain cluster: rep: Coat_protein__YP_331423__Shallot_yellow_stripe_virus__62059__D78-153

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00767.23 best	Poty_coat	62.7	5.80e-17	100.0%	33.6%

D2 medium residues 178-242

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4p63D00	3.40.910.10	Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase	0.56	41.0	2.65e-01	78.5%	88.1%
1xjuA00	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.55	43.0	3.33e-01	87.7%	82.1%
4epzA00	1.25.40.810	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ	0.54	40.0	3.11e-01	83.1%	64.3%
3l8nA01	1.10.220.20	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 ›	0.51	42.0	4.08e-01	95.4%	81.6%
3vldA02	1.25.40.580	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	43.0	3.39e-01	100.0%	45.1%
4i4cB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	44.0	2.74e-01	98.5%	47.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4833628	3143.1.1.2 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat	0.83	75.0	5.57e-01	100.0%	42.0%
4958226	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.57	49.0	3.25e-01	100.0%	54.6%
3278249	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.55	48.0	3.12e-01	100.0%	56.1%
3733386	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	45.0	3.38e-01	100.0%	64.7%
3165845	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.53	41.0	2.75e-01	84.6%	67.4%
3528706	192.29.1.11 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA	0.53	42.0	3.40e-01	87.7%	64.8%
3784235	5059.1.1.5 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA	0.53	46.0	2.97e-01	100.0%	50.6%
3728120	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.52	45.0	2.72e-01	100.0%	96.1%
3735275	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	45.0	3.33e-01	100.0%	61.1%
3922083	601.4.1.74 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › EPS8_2nd	0.52	44.0	3.26e-01	96.9%	46.9%
4934670	601.33.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain	0.51	40.0	3.80e-01	87.7%	91.3%
3174678	633.15.1.3 ↗	alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › SOG2	0.50	45.0	3.31e-01	100.0%	62.9%