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CP
Euk-VirRose_yellow_mosaic_virus
CP__YP_006908988__Rose_yellow_mosaic_virus__1048434
Identity
- Accession:
- YP_006908988 ↗
- Protein ID:
- CP
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Roymovirus›
Rose_yellow_mosaic_virus
TaxID: 1048434
Cluster
View cluster (85 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 124-219
Domain cluster:
rep: Coat_protein__YP_331423__Shallot_yellow_stripe_virus__62059__D78-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00767.23 best | Poty_coat | 79.7 | 3.60e-22 | 100.0% | 41.0% |
D2
medium
residues 220-285
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3obfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 44.0 | 3.22e-01 | 71.2% | 92.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.61 | 50.0 | 4.45e-01 | 92.4% | 100.0% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.59 | 41.0 | 3.42e-01 | 74.2% | 87.5% |
| 4uhwA09 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.58 | 46.0 | 4.03e-01 | 84.8% | 74.0% |
| 2wtvA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 44.0 | 3.41e-01 | 87.9% | 93.5% |
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 43.0 | 3.60e-01 | 84.8% | 57.4% |
| 1b8pA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 39.0 | 2.95e-01 | 75.8% | 91.3% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 40.0 | 3.51e-01 | 83.3% | 85.8% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.53 | 39.0 | 3.19e-01 | 78.8% | 71.7% |
| 3p86A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 41.0 | 3.15e-01 | 87.9% | 75.6% |
| 5hpfA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 35.0 | 2.65e-01 | 71.2% | 93.7% |
| 4xr7E01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 40.0 | 2.67e-01 | 90.9% | 51.3% |
| 2afdA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.50 | 43.0 | 3.94e-01 | 93.9% | 85.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4833627 | 3143.1.1.2 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat | 0.90 | 65.0 | 4.71e-01 | 75.8% | 30.9% |
| 5033121 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.63 | 50.0 | 4.45e-01 | 86.4% | 82.1% |
| 3995509 | 3730.1.1.0 ↗ | alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain | 0.62 | 52.0 | 5.38e-01 | 90.9% | 95.2% |
| 1933281 | 4126.1.1.3 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › LCIB_C_CA | 0.60 | 46.0 | 3.19e-01 | 83.3% | 41.3% |
| 4996902 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 46.0 | 3.89e-01 | 87.9% | 97.4% |
| 3999742 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.58 | 46.0 | 3.08e-01 | 98.5% | 20.7% |
| 5061574 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 39.0 | 3.74e-01 | 71.2% | 80.0% |
| 4280620 | 1128.1.1.7 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF27708 | 0.52 | 43.0 | 3.22e-01 | 92.4% | 96.1% |
| 3299464 | 159.1.2.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG-like | 0.52 | 38.0 | 3.37e-01 | 83.3% | 85.5% |
| 3212783 | 109.4.1.1242 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N | 0.51 | 44.0 | 3.10e-01 | 100.0% | 45.2% |
| 4669192 | 1128.1.1.7 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF27708 | 0.51 | 43.0 | 3.21e-01 | 92.4% | 92.3% |
| 3167601 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.51 | 38.0 | 3.37e-01 | 80.3% | 84.2% |