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CP
Euk-VirDonkey_orchid_virus_A
CP__YP_007969893__Donkey_orchid_virus_A__1198144
Identity
- Accession:
- YP_007969893 ↗
- Protein ID:
- CP
- Kingdom:
- euk
Quality
60.5
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Donkey_orchid_virus_A
TaxID: 1198144
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 73-125
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00767.23 best | Poty_coat | 64.7 | 1.40e-17 | 100.0% | 22.1% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 3.86e-01 | 79.2% | 44.8% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.64 | 44.0 | 4.27e-01 | 79.2% | 65.5% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.32e-01 | 75.5% | 65.6% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 44.0 | 3.55e-01 | 81.1% | 35.8% |
| 2kilA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.62 | 46.0 | 3.29e-01 | 84.9% | 24.9% |
| 6lmjB00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.62 | 43.0 | 3.67e-01 | 77.4% | 87.8% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 42.0 | 3.99e-01 | 83.0% | 61.8% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 39.0 | 3.64e-01 | 73.6% | 50.7% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 3.94e-01 | 86.8% | 71.3% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.58 | 41.0 | 3.55e-01 | 81.1% | 45.6% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 44.0 | 3.81e-01 | 84.9% | 97.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951511 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.76 | 52.0 | 5.31e-01 | 71.7% | 78.0% |
| 4099509 | 101.1.15.3 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung | 0.73 | 50.0 | 4.98e-01 | 79.2% | 69.1% |
| 4932085 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 52.0 | 4.59e-01 | 75.5% | 68.0% |
| 5005290 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.71 | 51.0 | 4.64e-01 | 75.5% | 74.3% |
| 4084154 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 47.0 | 4.89e-01 | 77.4% | 76.0% |
| 3941449 | 101.1.11.42 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD_like | 0.67 | 46.0 | 4.24e-01 | 71.7% | 55.7% |
| 3957510 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.66 | 56.0 | 3.59e-01 | 96.2% | 34.2% |
| 3997838 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.65 | 45.0 | 4.30e-01 | 73.6% | 61.5% |
| 3288843 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.64 | 54.0 | 3.44e-01 | 96.2% | 33.0% |
| 4146096 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.62 | 47.0 | 4.16e-01 | 83.0% | 56.2% |
| 5007512 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.62 | 41.0 | 4.15e-01 | 71.7% | 67.3% |
| 3858623 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.60 | 43.0 | 3.08e-01 | 77.4% | 24.7% |
| 3730715 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 43.0 | 4.30e-01 | 77.4% | 76.4% |
| 4942375 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 49.0 | 3.35e-01 | 92.5% | 26.8% |
| 2448601 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.59 | 41.0 | 3.47e-01 | 86.8% | 42.6% |
| 4379527 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.58 | 40.0 | 3.62e-01 | 81.1% | 48.2% |
| 4979915 | 304.103.1.10 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › DUF2148 | 0.57 | 45.0 | 3.16e-01 | 94.3% | 37.5% |
| 3744281 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 42.0 | 3.73e-01 | 84.9% | 61.3% |