CP

Euk-Vir

Carnation_yellow_fleck_virus

CP__YP_008858536__Carnation_yellow_fleck_virus__940280

Identity

74.5 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Carnation_yellow_fleck_virus

TaxID: 940280

View cluster (33 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-179

PDB

Domain cluster: rep: unnamed_protein_product__YP_003002362__Lettuce_chlorosis_virus__642478__D74-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	139.0	1.60e-40	100.0%	82.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ibyD02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	33.0	4.30e-01	89.3%	91.7%
2hsbA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.56	25.0	2.79e-01	87.4%	50.8%
2k0nA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.55	22.0	2.90e-01	97.5%	64.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3662968	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.58	18.0	2.98e-01	84.9%	71.7%
381796	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.55	27.0	2.95e-01	100.0%	52.7%
3587013	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.55	19.0	2.98e-01	74.2%	80.0%
None	—		0.51	18.0	2.94e-01	75.5%	86.7%