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CP

Euk-Vir

Tobacco_virus_1

CP__YP_009162627__Tobacco_virus_1__1692045

Identity

Accession:: YP_009162627 ↗
Protein ID:: CP
Kingdom:: euk

Quality

74.8 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Closterovirus› Tobacco_virus_1

TaxID: 1692045

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-141

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	69.1	4.20e-19	99.1%	54.0%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bgcA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	39.0	4.06e-01	99.1%	65.3%
7odyC01	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.58	33.0	3.60e-01	91.8%	65.2%
2cdqA03	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.56	30.0	3.43e-01	70.0%	67.9%
4asnA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	41.0	4.48e-01	90.9%	98.9%
1mw9X02	1.10.460.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2	0.53	41.0	3.63e-01	83.6%	68.7%
1d8cA03	1.20.1220.12	Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III	0.52	40.0	3.76e-01	100.0%	66.7%
1yf2A02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.52	28.0	2.84e-01	75.5%	50.5%
4a8eA02	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.52	44.0	3.79e-01	94.5%	86.6%
1x9fA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	38.0	3.53e-01	79.1%	75.5%
3ezxA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.52	32.0	3.44e-01	99.1%	75.6%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	38.0	3.53e-01	77.3%	73.0%
4bgpA01	1.20.142.20	Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 ›	0.51	44.0	4.24e-01	100.0%	82.7%
4nx9A01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.51	35.0	3.21e-01	71.8%	92.3%
1txuA02	1.20.1050.80	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain	0.51	36.0	3.16e-01	72.7%	79.4%
8p5sA01	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.51	35.0	2.81e-01	70.9%	78.8%
4em2A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	40.0	3.69e-01	88.2%	78.7%
7kz9B01	3.90.76.10	Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1	0.50	42.0	3.62e-01	92.7%	93.8%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4971435	3646.1.1.1 ↗	alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ	0.70	35.0	2.67e-01	74.5%	21.2%
4967023	3646.1.1.1 ↗	alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ	0.63	32.0	2.58e-01	74.5%	24.3%
3942067	4120.1.1.44 ↗	few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TraD_N	0.61	38.0	3.83e-01	77.3%	61.8%
3261203	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.61	43.0	3.22e-01	73.6%	96.3%
3927979	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.59	43.0	3.57e-01	79.1%	87.4%
4999495	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.58	44.0	3.75e-01	94.5%	49.4%
3265013	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.57	44.0	3.66e-01	84.5%	94.9%
3706808	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	32.0	3.40e-01	99.1%	64.2%
4946068	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.54	43.0	3.45e-01	86.4%	98.7%
4498193	376.1.1.37 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C	0.53	45.0	3.98e-01	93.6%	100.0%
3759091	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	43.0	3.53e-01	90.9%	93.2%
3688375	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.51	28.0	3.10e-01	92.7%	64.8%

D2 medium residues 142-208

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	48.9	6.80e-13	95.5%	32.8%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4uhiA01	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.66	48.0	2.95e-01	77.6%	78.5%
4fbcA01	3.40.420.10	Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1	0.59	39.0	2.93e-01	70.1%	62.1%
1ezvC00	1.20.810.10	Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C	0.55	47.0	2.99e-01	98.5%	66.5%
4xr7E01	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.54	39.0	2.62e-01	79.1%	86.4%
3eslA02	1.25.40.930	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	38.0	3.22e-01	79.1%	79.8%
1ykhA00	6.10.140.200	Special › Helix non-globular › Helix Hairpins ›	0.51	35.0	3.11e-01	71.6%	52.6%
4n1yB00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.50	40.0	2.89e-01	92.5%	86.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3856438	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.67	48.0	2.88e-01	77.6%	38.8%
2935	639.1.1.1 ↗	alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA › HHA	0.60	44.0	4.36e-01	79.1%	91.7%