CP

Euk-Vir

Cardamom_mosaic_virus

CP__YP_009509116__Cardamom_mosaic_virus__104637

Identity

68.1 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Macluravirus› Cardamom_mosaic_virus

TaxID: 104637

View cluster (85 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-263

PDB

Domain cluster: rep: coat_protein__YP_002956096__Triticum_mosaic_virus__431317__D124-248

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00767.23 best	Poty_coat	60.2	3.40e-16	100.0%	59.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rekA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	44.0	4.17e-01	88.6%	87.8%
1q6aA00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.53	32.0	3.61e-01	81.4%	78.5%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4833627	3143.1.1.2 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat	0.87	75.0	7.06e-01	89.3%	76.5%
2123187	3143.1.1.2 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat	0.87	82.0	7.30e-01	100.0%	74.7%
3311002	7512.1.1.1 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT	0.50	45.0	3.13e-01	100.0%	86.7%