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CP
Euk-VirWheat_stripe_mosaic_virus
CP__YP_009553316__Wheat_stripe_mosaic_virus__2364281
Identity
- Accession:
- YP_009553316 ↗
- Protein ID:
- CP
- Kingdom:
- euk
Quality
79.0
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Hepelivirales›
Benyviridae›
Wheat_stripe_mosaic_virus
TaxID: 2364281
Cluster
View cluster (36 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-101_126-169
Domain cluster:
rep: hypothetical_protein__YP_009337424__Hubei_virga-like_virus_1__1923324__D95-184_198-245
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00721.28 best | TMV_coat | 67.3 | 2.70e-18 | 100.0% | 91.8% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rmvA00 | 1.20.120.70 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Tobacco mosaic virus-like, coat protein | 0.81 | 76.0 | 7.23e-01 | 100.0% | 91.0% |
| 1cgmE00 | 1.20.120.70 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Tobacco mosaic virus-like, coat protein | 0.77 | 72.0 | 6.77e-01 | 100.0% | 90.0% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.72 | 44.0 | 5.48e-01 | 79.4% | 100.0% |
| 2ebzA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.68 | 41.0 | 5.10e-01 | 85.3% | 98.8% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.67 | 49.0 | 5.32e-01 | 85.3% | 91.2% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.67 | 52.0 | 5.31e-01 | 80.9% | 83.5% |
| 3zsuA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.67 | 51.0 | 5.51e-01 | 84.6% | 92.4% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.66 | 51.0 | 5.42e-01 | 83.8% | 90.8% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.66 | 48.0 | 5.39e-01 | 80.1% | 96.2% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.66 | 51.0 | 5.20e-01 | 80.9% | 95.4% |
| 6adqG01 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.64 | 53.0 | 4.80e-01 | 86.8% | 75.3% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 42.0 | 5.04e-01 | 80.9% | 100.0% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 57.0 | 5.88e-01 | 94.9% | 99.2% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 51.0 | 5.32e-01 | 88.2% | 90.6% |
| 1s05A00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.63 | 48.0 | 4.98e-01 | 79.4% | 95.3% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.63 | 46.0 | 5.00e-01 | 86.8% | 91.1% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.63 | 51.0 | 5.22e-01 | 86.0% | 92.2% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.63 | 50.0 | 5.16e-01 | 84.6% | 100.0% |
| 1a7vA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.62 | 48.0 | 5.02e-01 | 80.9% | 96.0% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.62 | 49.0 | 5.15e-01 | 89.0% | 91.9% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 52.0 | 5.26e-01 | 88.2% | 97.0% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 51.0 | 5.21e-01 | 89.0% | 90.8% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.61 | 47.0 | 5.02e-01 | 80.1% | 100.0% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 50.0 | 4.74e-01 | 86.8% | 94.4% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.61 | 49.0 | 4.69e-01 | 83.8% | 81.0% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.61 | 52.0 | 4.95e-01 | 91.9% | 82.8% |
| 1sziA02 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.60 | 49.0 | 4.98e-01 | 86.8% | 87.6% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 38.0 | 4.27e-01 | 72.1% | 83.2% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 37.0 | 4.36e-01 | 75.0% | 95.7% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.58 | 48.0 | 4.99e-01 | 90.4% | 96.0% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 34.0 | 4.19e-01 | 70.6% | 100.0% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.55 | 44.0 | 4.73e-01 | 88.2% | 97.5% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 42.0 | 4.53e-01 | 83.1% | 99.1% |
| 4yjwA00 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.54 | 46.0 | 4.41e-01 | 91.9% | 86.3% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 37.0 | 3.67e-01 | 75.7% | 67.6% |
| 2c0uA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 39.0 | 3.64e-01 | 77.2% | 65.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2989218 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.91 | 80.0 | 8.06e-01 | 100.0% | 90.5% |
| 3449485 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.89 | 71.0 | 7.77e-01 | 86.8% | 97.4% |
| 3400967 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.85 | 80.0 | 7.83e-01 | 100.0% | 96.6% |
| 3394141 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.85 | 80.0 | 7.78e-01 | 100.0% | 92.6% |
| 54478 | 601.6.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins | 0.84 | 80.0 | 7.51e-01 | 100.0% | 89.9% |
| 3434386 | 601.6.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat | 0.79 | 73.0 | 7.19e-01 | 100.0% | 93.1% |
| 5069197 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.67 | 38.0 | 4.75e-01 | 72.8% | 89.4% |
| 54415 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.66 | 51.0 | 5.21e-01 | 80.9% | 95.4% |
| 5068471 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.65 | 51.0 | 4.94e-01 | 83.1% | 94.7% |
| 3243897 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.64 | 52.0 | 5.20e-01 | 86.8% | 89.3% |
| 4441542 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.64 | 51.0 | 4.83e-01 | 84.6% | 79.4% |
| 3233670 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.64 | 52.0 | 5.15e-01 | 87.5% | 89.0% |
| 54434 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.62 | 48.0 | 5.05e-01 | 80.9% | 97.6% |
| 3920202 | 601.16.1.15 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › CRIC_ras_sig | 0.62 | 53.0 | 5.29e-01 | 91.9% | 98.6% |
| 5009461 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.62 | 48.0 | 4.76e-01 | 82.4% | 76.6% |
| 3267567 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.61 | 41.0 | 4.57e-01 | 73.5% | 85.5% |
| 5060134 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.61 | 50.0 | 4.85e-01 | 87.5% | 94.7% |
| 3491020 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.59 | 51.0 | 4.86e-01 | 91.9% | 91.6% |
| 3225374 | 601.1.2.6 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B | 0.59 | 49.0 | 5.14e-01 | 96.3% | 100.0% |
| 4376272 | 601.2.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 | 0.59 | 47.0 | 4.75e-01 | 86.8% | 87.1% |
| 4962581 | 5069.1.1.5 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_II | 0.58 | 47.0 | 4.37e-01 | 86.0% | 69.1% |
| 5041317 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.58 | 47.0 | 4.92e-01 | 88.2% | 98.4% |
| 3644387 | 601.1.2.81 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Serinc | 0.55 | 43.0 | 4.18e-01 | 88.2% | 74.0% |
| 4023214 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.54 | 39.0 | 3.69e-01 | 74.3% | 72.1% |
| 3164071 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.51 | 40.0 | 3.14e-01 | 83.1% | 61.7% |