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CP
Euk-VirBlackcurrant_leafroll-associated_virus_1
CP__YP_009553664__Blackcurrant_leafroll-associated_virus_1__2292426
Identity
- Accession:
- YP_009553664 ↗
- Protein ID:
- CP
- Kingdom:
- euk
Quality
80.2
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Blackcurrant_leafroll-associated_virus_1
TaxID: 2292426
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-187
Domain cluster:
rep: unnamed_protein_product__YP_003002362__Lettuce_chlorosis_virus__642478__D74-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 111.9 | 3.40e-32 | 98.7% | 73.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jhjA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.55 | 34.0 | 3.76e-01 | 90.2% | 77.5% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 22.0 | 3.38e-01 | 79.7% | 100.0% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 33.0 | 3.42e-01 | 85.0% | 67.9% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.51 | 36.0 | 3.95e-01 | 98.0% | 88.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4408503 | 192.2.1.43 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N | 0.51 | 27.0 | 2.83e-01 | 75.8% | 53.3% |
| 3512585 | 5010.1.1.5 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › TraD_N | 0.51 | 27.0 | 3.03e-01 | 76.5% | 64.3% |
| 4978170 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 43.0 | 3.95e-01 | 91.5% | 92.0% |
| 4588825 | 589.1.1.20 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › TraD_N | 0.50 | 27.0 | 2.90e-01 | 76.5% | 56.9% |
| 3942067 | 4120.1.1.44 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TraD_N | 0.50 | 27.0 | 3.04e-01 | 76.5% | 67.3% |