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CP
Euk-VirPassiflora_edulis_symptomless_virus
CP__YP_010088107__Passiflora_edulis_symptomless_virus__2294149
Identity
- Accession:
- YP_010088107 ↗
- Protein ID:
- CP
- Kingdom:
- euk
Quality
73.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Roymovirus›
Passiflora_edulis_symptomless_virus
TaxID: 2294149
Cluster
View cluster (85 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 137-222
Domain cluster:
rep: Coat_protein__YP_331423__Shallot_yellow_stripe_virus__62059__D78-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00767.23 best | Poty_coat | 53.8 | 3.00e-14 | 100.0% | 36.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.64 | 48.0 | 4.79e-01 | 82.6% | 91.3% |
| 3weeA03 | 3.90.640.60 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.60 | 45.0 | 4.50e-01 | 80.2% | 100.0% |
| 5i9eA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.57 | 42.0 | 3.96e-01 | 81.4% | 96.5% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.55 | 40.0 | 3.11e-01 | 75.6% | 75.3% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 44.0 | 3.87e-01 | 88.4% | 83.1% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 28.0 | 3.42e-01 | 77.9% | 80.0% |
| 4xmqA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 3.83e-01 | 89.5% | 76.7% |
| 2lyiA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 44.0 | 3.76e-01 | 91.9% | 64.9% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 41.0 | 4.31e-01 | 90.7% | 92.4% |
| 2hlyA00 | 3.10.550.10 | Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 | 0.53 | 44.0 | 3.40e-01 | 93.0% | 84.9% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 38.0 | 2.70e-01 | 75.6% | 92.9% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 41.0 | 3.55e-01 | 84.9% | 63.8% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.53 | 46.0 | 3.46e-01 | 97.7% | 75.6% |
| 4flnA02 | 3.20.190.20 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › | 0.53 | 41.0 | 3.49e-01 | 87.2% | 83.6% |
| 2wnhA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 43.0 | 2.83e-01 | 91.9% | 67.4% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 34.0 | 3.57e-01 | 82.6% | 74.4% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 31.0 | 3.23e-01 | 81.4% | 66.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2123187 | 3143.1.1.2 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat | 0.89 | 81.0 | 6.12e-01 | 100.0% | 44.6% |
| 5042330 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.70 | 52.0 | 5.67e-01 | 89.5% | 97.1% |
| 3696592 | 2484.1.1.220 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27033 | 0.64 | 54.0 | 4.10e-01 | 97.7% | 90.2% |
| 5049247 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.63 | 56.0 | 3.68e-01 | 100.0% | 53.3% |
| 3989311 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.62 | 46.0 | 4.02e-01 | 91.9% | 51.5% |
| 4981577 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.62 | 49.0 | 4.36e-01 | 90.7% | 59.2% |
| 3218904 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 31.0 | 3.99e-01 | 73.3% | 91.1% |
| 3975337 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.60 | 47.0 | 4.12e-01 | 91.9% | 54.8% |
| 3519811 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.59 | 51.0 | 3.65e-01 | 98.8% | 88.4% |
| 4970053 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.58 | 47.0 | 3.59e-01 | 94.2% | 60.0% |
| 3739651 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 49.0 | 3.14e-01 | 100.0% | 56.0% |
| 3682917 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 50.0 | 3.87e-01 | 100.0% | 67.0% |
| 4004361 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.57 | 47.0 | 4.09e-01 | 91.9% | 67.4% |
| 3283276 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 47.0 | 3.73e-01 | 100.0% | 93.0% |
| 139004 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.52 | 43.0 | 2.83e-01 | 91.9% | 68.4% |
| 3579929 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.52 | 38.0 | 2.89e-01 | 90.7% | 31.2% |
| 4947735 | 2004.1.1.1209 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrA_inter | 0.51 | 43.0 | 2.57e-01 | 95.3% | 19.9% |
| 5060912 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 43.0 | 2.57e-01 | 96.5% | 21.2% |
| 3593808 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 36.0 | 3.45e-01 | 75.6% | 87.0% |
| 4125334 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.50 | 42.0 | 2.56e-01 | 97.7% | 19.7% |
D2
medium
residues 224-293
Domain cluster:
rep: CP__YP_006908988__Rose_yellow_mosaic_virus__1048434__D220-285