←Back to structures
CP
Euk-VirBlackberry_virus_Y
CP__YP_851208__Blackberry_virus_Y__323118
Identity
- Accession:
- YP_851208 ↗
- Protein ID:
- CP
- Kingdom:
- euk
Quality
61.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Brambyvirus›
Blackberry_virus_Y
TaxID: 323118
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 168-307
Domain cluster:
rep: coat_protein__YP_002956096__Triticum_mosaic_virus__431317__D124-248
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00767.23 best | Poty_coat | 72.4 | 6.10e-20 | 100.0% | 59.8% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i0wB01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.51 | 39.0 | 2.99e-01 | 79.3% | 88.1% |
| 3snxA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 38.0 | 2.71e-01 | 79.3% | 81.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4833627 | 3143.1.1.2 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat | 0.89 | 77.0 | 7.29e-01 | 90.0% | 77.2% |
| 4890753 | 4342.1.1.2 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › YqgF | 0.51 | 34.0 | 3.05e-01 | 91.4% | 46.8% |