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CPh
Euk-VirTobacco_virus_1
CPh__YP_009162625__Tobacco_virus_1__1692045
Identity
- Accession:
- YP_009162625 ↗
- Protein ID:
- CPh
- Kingdom:
- euk
Quality
74.0
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Tobacco_virus_1
TaxID: 1692045
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 199-336
Domain cluster:
rep: HSP90__YP_009553249__Blackcurrant_leafroll-associated_virus_1__2292426__D184-302
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 77.6 | 1.10e-21 | 100.0% | 25.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.55 | 22.0 | 2.89e-01 | 87.0% | 63.5% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 30.0 | 3.66e-01 | 71.0% | 86.6% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.50 | 32.0 | 3.07e-01 | 87.7% | 52.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166681 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.60 | 39.0 | 4.33e-01 | 75.4% | 84.8% |
| 3587550 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.57 | 39.0 | 4.19e-01 | 70.3% | 99.2% |
| 3964039 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.52 | 38.0 | 3.78e-01 | 77.5% | 84.8% |
| 3580700 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.50 | 36.0 | 4.02e-01 | 81.2% | 97.1% |
D2
high
residues 350-497
Domain cluster:
rep: p64__YP_008858534__Carnation_yellow_fleck_virus__940280__D331-495
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 132.2 | 3.00e-38 | 99.3% | 26.2% |
D3
medium
residues 31-121
Domain cluster:
rep: p54__YP_003075969__Carrot_yellow_leaf_virus__656190__D13-92
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 53.0 | 3.20e-14 | 100.0% | 20.1% |
D4
medium
residues 140-183
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 33.0 | 3.60e-08 | 100.0% | 7.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1td2A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 50.0 | 3.09e-01 | 97.7% | 19.2% |
| 1z2lA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.59 | 47.0 | 2.84e-01 | 88.6% | 30.4% |
| 2prrA01 | 1.20.5.810 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › AhpD-like | 0.58 | 45.0 | 4.28e-01 | 86.4% | 90.6% |
| 2ac2A01 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 37.0 | 2.65e-01 | 81.8% | 87.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4489811 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.69 | 54.0 | 5.27e-01 | 88.6% | 88.0% |
| 3966804 | 148.1.3.238 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 | 0.64 | 46.0 | 4.32e-01 | 81.8% | 90.0% |
| 3963295 | 148.1.3.238 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 | 0.64 | 48.0 | 4.53e-01 | 84.1% | 87.3% |
| 4999145 | 148.1.3.3 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red | 0.63 | 49.0 | 4.65e-01 | 88.6% | 90.9% |
| 4933655 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.62 | 47.0 | 4.51e-01 | 88.6% | 76.4% |
| 4561787 | 6146.2.1.1 ↗ | a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C | 0.61 | 44.0 | 3.51e-01 | 77.3% | 71.6% |
| 3996657 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.60 | 47.0 | 4.62e-01 | 88.6% | 92.0% |
| 5046622 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 3.93e-01 | 88.6% | 81.3% |
| 3236773 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 43.0 | 3.06e-01 | 88.6% | 37.8% |
| 3999742 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.53 | 45.0 | 2.76e-01 | 95.5% | 45.2% |
| 3585365 | 221.1.1.168 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B | 0.53 | 46.0 | 2.77e-01 | 100.0% | 23.9% |